Gene Details | GeDiPNet - Complete Gene Info, Disease Associations & Pathways

Gene Gene SNPs miRNA Transcription factors Gene ontology Other IDs Protein Associated diseases
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.	1406
Gene name Gene Name - the full gene name approved by the HGNC.	Cone-rod homeobox
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.	CRX
Synonyms (NCBI Gene) Gene synonyms aliases	CORD2, CRD, LCA7, OTX3
Chromosome Chromosome number	19
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.	19q13.33
Summary Summary of gene provided in NCBI Entrez Gene.	The protein encoded by this gene is a photoreceptor-specific transcription factor which plays a role in the differentiation of photoreceptor cells. This homeodomain protein is necessary for the maintenance of normal cone and rod function. Mutations in thi

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SNP ID	Visualize variation	Clinical significance	Consequence
rs61748436	G>A	Pathogenic, likely-pathogenic	Coding sequence variant, missense variant
rs61748449	G>-	Not-provided, pathogenic	Coding sequence variant, frameshift variant
rs62654391	G>A	Not-provided, likely-pathogenic	Coding sequence variant, missense variant
rs104894671	A>C	Not-provided, pathogenic	Coding sequence variant, missense variant
rs104894672	C>T	Not-provided, pathogenic	Coding sequence variant, missense variant
rs104894673	C>T	Not-provided, pathogenic	Coding sequence variant, missense variant
rs139340178	C>G	Uncertain-significance, likely-benign, conflicting-interpretations-of-pathogenicity	Missense variant, coding sequence variant
rs281865198	T>C	Likely-pathogenic	Splice donor variant
rs281865515	G>-	Pathogenic, not-provided	Coding sequence variant, frameshift variant
rs281865516	C>-	Pathogenic, not-provided	Coding sequence variant, frameshift variant
rs527236062	G>C	Pathogenic	Coding sequence variant, missense variant
rs527236063	G>A,C	Likely-pathogenic	Coding sequence variant, missense variant, synonymous variant
rs756105390	G>A,C	Likely-pathogenic	Synonymous variant, coding sequence variant, missense variant
rs771450991	G>A	Likely-pathogenic	Missense variant, coding sequence variant
rs786205521	G>A	Likely-pathogenic	Missense variant, coding sequence variant
rs786205630	C>-	Likely-pathogenic	Frameshift variant, coding sequence variant
rs863224863	G>A	Likely-pathogenic	Missense variant, coding sequence variant
rs864309706	C>G	Pathogenic	Coding sequence variant, stop gained
rs864309707	C>-	Pathogenic	Frameshift variant, coding sequence variant
rs864309708	T>-	Pathogenic	Frameshift variant, coding sequence variant
rs869312175	C>-	Likely-pathogenic	Frameshift variant, coding sequence variant
rs878853383	G>-	Likely-pathogenic	Frameshift variant, coding sequence variant
rs886044121	T>-	Pathogenic	Frameshift variant, coding sequence variant
rs1064796109	GAG>TTA	Likely-pathogenic	Intron variant
rs1064797246	C>-	Likely-pathogenic	Coding sequence variant, frameshift variant
rs1064797247	C>A	Likely-pathogenic	Coding sequence variant, stop gained
rs1437021651	C>T	Likely-pathogenic	Missense variant, coding sequence variant
rs1555801777	->A	Likely-pathogenic	Frameshift variant, coding sequence variant
rs1555801963	C>T	Likely-pathogenic	Coding sequence variant, stop gained
rs1555801989	TC>-	Likely-pathogenic	Frameshift variant, coding sequence variant
rs1555802058	CTGGACTACA>GATCCC	Likely-pathogenic	Frameshift variant, coding sequence variant
rs1568626209	G>-	Pathogenic	Frameshift variant, coding sequence variant
rs1568626289	G>-	Likely-pathogenic	Frameshift variant, coding sequence variant
rs1599991268	->C	Likely-pathogenic	Frameshift variant, coding sequence variant
rs1599991538	GT>-	Likely-pathogenic	Frameshift variant, coding sequence variant
rs1599991611	CA>-	Pathogenic	Stop gained, coding sequence variant
rs1599992622	G>A	Likely-pathogenic	Stop gained, coding sequence variant
rs1599992745	T>C	Likely-pathogenic	Terminator codon variant, stop lost

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miRTarBase ID	miRNA	Experiments	Reference
MIRT672521	hsa-miR-500a-5p	HITS-CLIP	23824327
MIRT672520	hsa-miR-6499-5p	HITS-CLIP	23824327
MIRT672519	hsa-miR-24-3p	HITS-CLIP	23824327
MIRT672518	hsa-miR-6781-5p	HITS-CLIP	23824327
MIRT672517	hsa-miR-3178	HITS-CLIP	23824327
MIRT672521	hsa-miR-500a-5p	HITS-CLIP	23824327
MIRT672520	hsa-miR-6499-5p	HITS-CLIP	23824327
MIRT672519	hsa-miR-24-3p	HITS-CLIP	23824327
MIRT672518	hsa-miR-6781-5p	HITS-CLIP	23824327
MIRT672517	hsa-miR-3178	HITS-CLIP	23824327
MIRT910968	hsa-let-7a	CLIP-seq
MIRT910969	hsa-let-7b	CLIP-seq
MIRT910970	hsa-let-7c	CLIP-seq
MIRT910971	hsa-let-7d	CLIP-seq
MIRT910972	hsa-let-7e	CLIP-seq
MIRT910973	hsa-let-7f	CLIP-seq
MIRT910974	hsa-let-7g	CLIP-seq
MIRT910975	hsa-let-7i	CLIP-seq
MIRT910976	hsa-miR-10a	CLIP-seq
MIRT910977	hsa-miR-10b	CLIP-seq
MIRT910978	hsa-miR-1228	CLIP-seq
MIRT910979	hsa-miR-1236	CLIP-seq
MIRT910980	hsa-miR-1258	CLIP-seq
MIRT910981	hsa-miR-125a-3p	CLIP-seq
MIRT910982	hsa-miR-1266	CLIP-seq
MIRT910983	hsa-miR-147	CLIP-seq
MIRT910984	hsa-miR-1827	CLIP-seq
MIRT910985	hsa-miR-186	CLIP-seq
MIRT910986	hsa-miR-197	CLIP-seq
MIRT910987	hsa-miR-199a-5p	CLIP-seq
MIRT910988	hsa-miR-199b-5p	CLIP-seq
MIRT910989	hsa-miR-2110	CLIP-seq
MIRT910990	hsa-miR-24	CLIP-seq
MIRT910991	hsa-miR-296-3p	CLIP-seq
MIRT910992	hsa-miR-3122	CLIP-seq
MIRT910993	hsa-miR-3133	CLIP-seq
MIRT910994	hsa-miR-3146	CLIP-seq
MIRT910995	hsa-miR-3151	CLIP-seq
MIRT910996	hsa-miR-3152-3p	CLIP-seq
MIRT910997	hsa-miR-3160-3p	CLIP-seq
MIRT910998	hsa-miR-3160-5p	CLIP-seq
MIRT910999	hsa-miR-3180-5p	CLIP-seq
MIRT911000	hsa-miR-3187-3p	CLIP-seq
MIRT911001	hsa-miR-329	CLIP-seq
MIRT911002	hsa-miR-337-3p	CLIP-seq
MIRT911003	hsa-miR-339-5p	CLIP-seq
MIRT911004	hsa-miR-3614-5p	CLIP-seq
MIRT911005	hsa-miR-362-3p	CLIP-seq
MIRT911006	hsa-miR-3663-5p	CLIP-seq
MIRT911007	hsa-miR-3664-3p	CLIP-seq
MIRT911008	hsa-miR-3679-3p	CLIP-seq
MIRT911009	hsa-miR-3689a-3p	CLIP-seq
MIRT911010	hsa-miR-3689c	CLIP-seq
MIRT911011	hsa-miR-3689d	CLIP-seq
MIRT911012	hsa-miR-3911	CLIP-seq
MIRT911013	hsa-miR-3913-5p	CLIP-seq
MIRT911014	hsa-miR-3926	CLIP-seq
MIRT911015	hsa-miR-3927	CLIP-seq
MIRT911016	hsa-miR-3929	CLIP-seq
MIRT911017	hsa-miR-3934	CLIP-seq
MIRT911018	hsa-miR-3937	CLIP-seq
MIRT911019	hsa-miR-3941	CLIP-seq
MIRT911020	hsa-miR-411	CLIP-seq
MIRT911021	hsa-miR-4271	CLIP-seq
MIRT911022	hsa-miR-4276	CLIP-seq
MIRT911023	hsa-miR-4284	CLIP-seq
MIRT911024	hsa-miR-4302	CLIP-seq
MIRT911025	hsa-miR-4419b	CLIP-seq
MIRT911026	hsa-miR-4421	CLIP-seq
MIRT911027	hsa-miR-4433	CLIP-seq
MIRT911028	hsa-miR-4435	CLIP-seq
MIRT911029	hsa-miR-4447	CLIP-seq
MIRT911030	hsa-miR-4459	CLIP-seq
MIRT911031	hsa-miR-4472	CLIP-seq
MIRT911032	hsa-miR-4478	CLIP-seq
MIRT911033	hsa-miR-4487	CLIP-seq
MIRT911034	hsa-miR-4518	CLIP-seq
MIRT911035	hsa-miR-4649-3p	CLIP-seq
MIRT911036	hsa-miR-4683	CLIP-seq
MIRT911037	hsa-miR-4684-5p	CLIP-seq
MIRT911038	hsa-miR-4694-5p	CLIP-seq
MIRT911039	hsa-miR-4697-3p	CLIP-seq
MIRT911040	hsa-miR-4701-5p	CLIP-seq
MIRT911041	hsa-miR-4716-5p	CLIP-seq
MIRT911042	hsa-miR-4722-5p	CLIP-seq
MIRT911043	hsa-miR-4725-3p	CLIP-seq
MIRT911044	hsa-miR-4728-5p	CLIP-seq
MIRT911045	hsa-miR-4744	CLIP-seq
MIRT911046	hsa-miR-4755-3p	CLIP-seq
MIRT911047	hsa-miR-4762-5p	CLIP-seq
MIRT911048	hsa-miR-4767	CLIP-seq
MIRT911049	hsa-miR-4768-3p	CLIP-seq
MIRT911050	hsa-miR-4781-3p	CLIP-seq
MIRT911051	hsa-miR-4786-5p	CLIP-seq
MIRT911052	hsa-miR-4793-3p	CLIP-seq
MIRT911053	hsa-miR-4793-5p	CLIP-seq
MIRT911054	hsa-miR-4794	CLIP-seq
MIRT911055	hsa-miR-4795-3p	CLIP-seq
MIRT911056	hsa-miR-485-5p	CLIP-seq
MIRT911057	hsa-miR-491-5p	CLIP-seq
MIRT911058	hsa-miR-500a	CLIP-seq
MIRT911059	hsa-miR-507	CLIP-seq
MIRT911060	hsa-miR-508-5p	CLIP-seq
MIRT911061	hsa-miR-5096	CLIP-seq
MIRT911062	hsa-miR-520a-5p	CLIP-seq
MIRT911063	hsa-miR-525-5p	CLIP-seq
MIRT911064	hsa-miR-548aa	CLIP-seq
MIRT911065	hsa-miR-548s	CLIP-seq
MIRT911066	hsa-miR-557	CLIP-seq
MIRT911067	hsa-miR-558	CLIP-seq
MIRT911068	hsa-miR-588	CLIP-seq
MIRT911069	hsa-miR-593	CLIP-seq
MIRT911070	hsa-miR-603	CLIP-seq
MIRT911071	hsa-miR-640	CLIP-seq
MIRT911072	hsa-miR-644	CLIP-seq
MIRT911073	hsa-miR-764	CLIP-seq
MIRT911074	hsa-miR-766	CLIP-seq
MIRT911075	hsa-miR-873	CLIP-seq
MIRT911076	hsa-miR-940	CLIP-seq
MIRT911077	hsa-miR-98	CLIP-seq
MIRT910981	hsa-miR-125a-3p	CLIP-seq
MIRT910986	hsa-miR-197	CLIP-seq
MIRT911000	hsa-miR-3187-3p	CLIP-seq
MIRT911006	hsa-miR-3663-5p	CLIP-seq
MIRT911017	hsa-miR-3934	CLIP-seq
MIRT911020	hsa-miR-411	CLIP-seq
MIRT911028	hsa-miR-4435	CLIP-seq
MIRT911040	hsa-miR-4701-5p	CLIP-seq
MIRT911041	hsa-miR-4716-5p	CLIP-seq
MIRT911046	hsa-miR-4755-3p	CLIP-seq
MIRT911050	hsa-miR-4781-3p	CLIP-seq
MIRT911061	hsa-miR-5096	CLIP-seq
MIRT911065	hsa-miR-548s	CLIP-seq
MIRT911068	hsa-miR-588	CLIP-seq
MIRT911071	hsa-miR-640	CLIP-seq
MIRT911073	hsa-miR-764	CLIP-seq
MIRT910981	hsa-miR-125a-3p	CLIP-seq
MIRT910986	hsa-miR-197	CLIP-seq
MIRT911000	hsa-miR-3187-3p	CLIP-seq
MIRT911006	hsa-miR-3663-5p	CLIP-seq
MIRT911017	hsa-miR-3934	CLIP-seq
MIRT911020	hsa-miR-411	CLIP-seq
MIRT911028	hsa-miR-4435	CLIP-seq
MIRT911040	hsa-miR-4701-5p	CLIP-seq
MIRT911041	hsa-miR-4716-5p	CLIP-seq
MIRT911046	hsa-miR-4755-3p	CLIP-seq
MIRT911050	hsa-miR-4781-3p	CLIP-seq
MIRT911061	hsa-miR-5096	CLIP-seq
MIRT911065	hsa-miR-548s	CLIP-seq
MIRT911068	hsa-miR-588	CLIP-seq
MIRT911071	hsa-miR-640	CLIP-seq
MIRT911073	hsa-miR-764	CLIP-seq
MIRT910981	hsa-miR-125a-3p	CLIP-seq
MIRT910986	hsa-miR-197	CLIP-seq
MIRT911000	hsa-miR-3187-3p	CLIP-seq
MIRT911006	hsa-miR-3663-5p	CLIP-seq
MIRT911017	hsa-miR-3934	CLIP-seq
MIRT911028	hsa-miR-4435	CLIP-seq
MIRT911040	hsa-miR-4701-5p	CLIP-seq
MIRT911041	hsa-miR-4716-5p	CLIP-seq
MIRT911046	hsa-miR-4755-3p	CLIP-seq
MIRT911050	hsa-miR-4781-3p	CLIP-seq
MIRT911061	hsa-miR-5096	CLIP-seq
MIRT911065	hsa-miR-548s	CLIP-seq
MIRT911068	hsa-miR-588	CLIP-seq
MIRT911071	hsa-miR-640	CLIP-seq
MIRT911073	hsa-miR-764	CLIP-seq
MIRT910968	hsa-let-7a	CLIP-seq
MIRT910969	hsa-let-7b	CLIP-seq
MIRT910970	hsa-let-7c	CLIP-seq
MIRT910971	hsa-let-7d	CLIP-seq
MIRT910972	hsa-let-7e	CLIP-seq
MIRT910973	hsa-let-7f	CLIP-seq
MIRT910974	hsa-let-7g	CLIP-seq
MIRT910975	hsa-let-7i	CLIP-seq
MIRT1970076	hsa-miR-106a	CLIP-seq
MIRT1970077	hsa-miR-106b	CLIP-seq
MIRT910976	hsa-miR-10a	CLIP-seq
MIRT910977	hsa-miR-10b	CLIP-seq
MIRT1970078	hsa-miR-1227	CLIP-seq
MIRT1970079	hsa-miR-1234	CLIP-seq
MIRT910979	hsa-miR-1236	CLIP-seq
MIRT910980	hsa-miR-1258	CLIP-seq
MIRT910981	hsa-miR-125a-3p	CLIP-seq
MIRT1970080	hsa-miR-1281	CLIP-seq
MIRT1970081	hsa-miR-150	CLIP-seq
MIRT1970082	hsa-miR-17	CLIP-seq
MIRT910984	hsa-miR-1827	CLIP-seq
MIRT1970083	hsa-miR-1915	CLIP-seq
MIRT910986	hsa-miR-197	CLIP-seq
MIRT910987	hsa-miR-199a-5p	CLIP-seq
MIRT910988	hsa-miR-199b-5p	CLIP-seq
MIRT1970084	hsa-miR-20a	CLIP-seq
MIRT1970085	hsa-miR-20b	CLIP-seq
MIRT1970086	hsa-miR-2114	CLIP-seq
MIRT910990	hsa-miR-24	CLIP-seq
MIRT910991	hsa-miR-296-3p	CLIP-seq
MIRT1970087	hsa-miR-302a	CLIP-seq
MIRT1970088	hsa-miR-302b	CLIP-seq
MIRT1970089	hsa-miR-302c	CLIP-seq
MIRT1970090	hsa-miR-302d	CLIP-seq
MIRT1970091	hsa-miR-302e	CLIP-seq
MIRT910992	hsa-miR-3122	CLIP-seq
MIRT1970092	hsa-miR-3137	CLIP-seq
MIRT910996	hsa-miR-3152-3p	CLIP-seq
MIRT911000	hsa-miR-3187-3p	CLIP-seq
MIRT1970093	hsa-miR-338-3p	CLIP-seq
MIRT911003	hsa-miR-339-5p	CLIP-seq
MIRT911006	hsa-miR-3663-5p	CLIP-seq
MIRT911009	hsa-miR-3689a-3p	CLIP-seq
MIRT911010	hsa-miR-3689c	CLIP-seq
MIRT1970094	hsa-miR-372	CLIP-seq
MIRT1970095	hsa-miR-373	CLIP-seq
MIRT911013	hsa-miR-3913-5p	CLIP-seq
MIRT911015	hsa-miR-3927	CLIP-seq
MIRT911016	hsa-miR-3929	CLIP-seq
MIRT911017	hsa-miR-3934	CLIP-seq
MIRT1970096	hsa-miR-3945	CLIP-seq
MIRT1970097	hsa-miR-4253	CLIP-seq
MIRT911023	hsa-miR-4284	CLIP-seq
MIRT1970098	hsa-miR-432	CLIP-seq
MIRT911025	hsa-miR-4419b	CLIP-seq
MIRT911026	hsa-miR-4421	CLIP-seq
MIRT911027	hsa-miR-4433	CLIP-seq
MIRT911028	hsa-miR-4435	CLIP-seq
MIRT1970099	hsa-miR-4438	CLIP-seq
MIRT911030	hsa-miR-4459	CLIP-seq
MIRT911032	hsa-miR-4478	CLIP-seq
MIRT1970100	hsa-miR-4530	CLIP-seq
MIRT1970101	hsa-miR-4532	CLIP-seq
MIRT911035	hsa-miR-4649-3p	CLIP-seq
MIRT911036	hsa-miR-4683	CLIP-seq
MIRT911037	hsa-miR-4684-5p	CLIP-seq
MIRT1970102	hsa-miR-4685-5p	CLIP-seq
MIRT911038	hsa-miR-4694-5p	CLIP-seq
MIRT911040	hsa-miR-4701-5p	CLIP-seq
MIRT1970103	hsa-miR-4715-3p	CLIP-seq
MIRT911041	hsa-miR-4716-5p	CLIP-seq
MIRT911042	hsa-miR-4722-5p	CLIP-seq
MIRT911044	hsa-miR-4728-5p	CLIP-seq
MIRT911046	hsa-miR-4755-3p	CLIP-seq
MIRT911048	hsa-miR-4767	CLIP-seq
MIRT911049	hsa-miR-4768-3p	CLIP-seq
MIRT911050	hsa-miR-4781-3p	CLIP-seq
MIRT911051	hsa-miR-4786-5p	CLIP-seq
MIRT911053	hsa-miR-4793-5p	CLIP-seq
MIRT911054	hsa-miR-4794	CLIP-seq
MIRT911058	hsa-miR-500a	CLIP-seq
MIRT911059	hsa-miR-507	CLIP-seq
MIRT1970104	hsa-miR-5095	CLIP-seq
MIRT911061	hsa-miR-5096	CLIP-seq
MIRT1970105	hsa-miR-512-3p	CLIP-seq
MIRT1970106	hsa-miR-519d	CLIP-seq
MIRT1970107	hsa-miR-520a-3p	CLIP-seq
MIRT1970108	hsa-miR-520b	CLIP-seq
MIRT1970109	hsa-miR-520c-3p	CLIP-seq
MIRT1970110	hsa-miR-520d-3p	CLIP-seq
MIRT1970111	hsa-miR-520e	CLIP-seq
MIRT1970112	hsa-miR-520g	CLIP-seq
MIRT1970113	hsa-miR-520h	CLIP-seq
MIRT1970114	hsa-miR-541	CLIP-seq
MIRT911064	hsa-miR-548aa	CLIP-seq
MIRT911065	hsa-miR-548s	CLIP-seq
MIRT911066	hsa-miR-557	CLIP-seq
MIRT911068	hsa-miR-588	CLIP-seq
MIRT911069	hsa-miR-593	CLIP-seq
MIRT911071	hsa-miR-640	CLIP-seq
MIRT1970115	hsa-miR-654-5p	CLIP-seq
MIRT911073	hsa-miR-764	CLIP-seq
MIRT1970116	hsa-miR-93	CLIP-seq
MIRT911076	hsa-miR-940	CLIP-seq
MIRT911077	hsa-miR-98	CLIP-seq
MIRT910968	hsa-let-7a	CLIP-seq
MIRT910969	hsa-let-7b	CLIP-seq
MIRT910970	hsa-let-7c	CLIP-seq
MIRT910971	hsa-let-7d	CLIP-seq
MIRT910972	hsa-let-7e	CLIP-seq
MIRT910973	hsa-let-7f	CLIP-seq
MIRT910974	hsa-let-7g	CLIP-seq
MIRT910975	hsa-let-7i	CLIP-seq
MIRT2206043	hsa-miR-1	CLIP-seq
MIRT1970076	hsa-miR-106a	CLIP-seq
MIRT1970077	hsa-miR-106b	CLIP-seq
MIRT1970078	hsa-miR-1227	CLIP-seq
MIRT1970079	hsa-miR-1234	CLIP-seq
MIRT910980	hsa-miR-1258	CLIP-seq
MIRT910981	hsa-miR-125a-3p	CLIP-seq
MIRT2206044	hsa-miR-1470	CLIP-seq
MIRT1970081	hsa-miR-150	CLIP-seq
MIRT1970082	hsa-miR-17	CLIP-seq
MIRT910984	hsa-miR-1827	CLIP-seq
MIRT2206045	hsa-miR-1910	CLIP-seq
MIRT2206046	hsa-miR-205	CLIP-seq
MIRT2206047	hsa-miR-206	CLIP-seq
MIRT1970084	hsa-miR-20a	CLIP-seq
MIRT1970085	hsa-miR-20b	CLIP-seq
MIRT1970086	hsa-miR-2114	CLIP-seq
MIRT910990	hsa-miR-24	CLIP-seq
MIRT910991	hsa-miR-296-3p	CLIP-seq
MIRT2206048	hsa-miR-297	CLIP-seq
MIRT1970087	hsa-miR-302a	CLIP-seq
MIRT1970088	hsa-miR-302b	CLIP-seq
MIRT1970089	hsa-miR-302c	CLIP-seq
MIRT1970090	hsa-miR-302d	CLIP-seq
MIRT1970091	hsa-miR-302e	CLIP-seq
MIRT910992	hsa-miR-3122	CLIP-seq
MIRT1970092	hsa-miR-3137	CLIP-seq
MIRT910996	hsa-miR-3152-3p	CLIP-seq
MIRT910997	hsa-miR-3160-3p	CLIP-seq
MIRT910999	hsa-miR-3180-5p	CLIP-seq
MIRT911004	hsa-miR-3614-5p	CLIP-seq
MIRT911009	hsa-miR-3689a-3p	CLIP-seq
MIRT911010	hsa-miR-3689c	CLIP-seq
MIRT1970094	hsa-miR-372	CLIP-seq
MIRT1970095	hsa-miR-373	CLIP-seq
MIRT911013	hsa-miR-3913-5p	CLIP-seq
MIRT911014	hsa-miR-3926	CLIP-seq
MIRT911015	hsa-miR-3927	CLIP-seq
MIRT911017	hsa-miR-3934	CLIP-seq
MIRT911018	hsa-miR-3937	CLIP-seq
MIRT1970096	hsa-miR-3945	CLIP-seq
MIRT1970097	hsa-miR-4253	CLIP-seq
MIRT911023	hsa-miR-4284	CLIP-seq
MIRT2206049	hsa-miR-4307	CLIP-seq
MIRT911027	hsa-miR-4433	CLIP-seq
MIRT1970099	hsa-miR-4438	CLIP-seq
MIRT911030	hsa-miR-4459	CLIP-seq
MIRT911033	hsa-miR-4487	CLIP-seq
MIRT2206050	hsa-miR-4667-3p	CLIP-seq
MIRT911036	hsa-miR-4683	CLIP-seq
MIRT911038	hsa-miR-4694-5p	CLIP-seq
MIRT1970103	hsa-miR-4715-3p	CLIP-seq
MIRT911044	hsa-miR-4728-5p	CLIP-seq
MIRT2206051	hsa-miR-4735-5p	CLIP-seq
MIRT2206052	hsa-miR-4740-3p	CLIP-seq
MIRT911048	hsa-miR-4767	CLIP-seq
MIRT911049	hsa-miR-4768-3p	CLIP-seq
MIRT2206053	hsa-miR-4775	CLIP-seq
MIRT911051	hsa-miR-4786-5p	CLIP-seq
MIRT911055	hsa-miR-4795-3p	CLIP-seq
MIRT911058	hsa-miR-500a	CLIP-seq
MIRT1970104	hsa-miR-5095	CLIP-seq
MIRT1970106	hsa-miR-519d	CLIP-seq
MIRT1970107	hsa-miR-520a-3p	CLIP-seq
MIRT911062	hsa-miR-520a-5p	CLIP-seq
MIRT1970108	hsa-miR-520b	CLIP-seq
MIRT1970109	hsa-miR-520c-3p	CLIP-seq
MIRT1970110	hsa-miR-520d-3p	CLIP-seq
MIRT1970111	hsa-miR-520e	CLIP-seq
MIRT1970112	hsa-miR-520g	CLIP-seq
MIRT1970113	hsa-miR-520h	CLIP-seq
MIRT911063	hsa-miR-525-5p	CLIP-seq
MIRT1970114	hsa-miR-541	CLIP-seq
MIRT911065	hsa-miR-548s	CLIP-seq
MIRT911067	hsa-miR-558	CLIP-seq
MIRT2206054	hsa-miR-567	CLIP-seq
MIRT2206055	hsa-miR-590-3p	CLIP-seq
MIRT2206056	hsa-miR-613	CLIP-seq
MIRT911071	hsa-miR-640	CLIP-seq
MIRT1970115	hsa-miR-654-5p	CLIP-seq
MIRT911073	hsa-miR-764	CLIP-seq
MIRT1970116	hsa-miR-93	CLIP-seq
MIRT911076	hsa-miR-940	CLIP-seq
MIRT911077	hsa-miR-98	CLIP-seq
MIRT2386485	hsa-miR-1972	CLIP-seq
MIRT1970086	hsa-miR-2114	CLIP-seq
MIRT1970092	hsa-miR-3137	CLIP-seq
MIRT1970093	hsa-miR-338-3p	CLIP-seq
MIRT1970096	hsa-miR-3945	CLIP-seq
MIRT1970097	hsa-miR-4253	CLIP-seq
MIRT2386486	hsa-miR-4650-5p	CLIP-seq
MIRT2386487	hsa-miR-4712-3p	CLIP-seq
MIRT2386488	hsa-miR-510	CLIP-seq
MIRT910976	hsa-miR-10a	CLIP-seq
MIRT910977	hsa-miR-10b	CLIP-seq
MIRT1970080	hsa-miR-1281	CLIP-seq
MIRT910984	hsa-miR-1827	CLIP-seq
MIRT2447693	hsa-miR-2861	CLIP-seq
MIRT910992	hsa-miR-3122	CLIP-seq
MIRT1970093	hsa-miR-338-3p	CLIP-seq
MIRT911003	hsa-miR-339-5p	CLIP-seq
MIRT2447694	hsa-miR-3613-3p	CLIP-seq
MIRT911004	hsa-miR-3614-5p	CLIP-seq
MIRT911009	hsa-miR-3689a-3p	CLIP-seq
MIRT911010	hsa-miR-3689c	CLIP-seq
MIRT911013	hsa-miR-3913-5p	CLIP-seq
MIRT911014	hsa-miR-3926	CLIP-seq
MIRT911018	hsa-miR-3937	CLIP-seq
MIRT911026	hsa-miR-4421	CLIP-seq
MIRT1970100	hsa-miR-4530	CLIP-seq
MIRT1970101	hsa-miR-4532	CLIP-seq
MIRT911037	hsa-miR-4684-5p	CLIP-seq
MIRT2447695	hsa-miR-4714-3p	CLIP-seq
MIRT911044	hsa-miR-4728-5p	CLIP-seq
MIRT911048	hsa-miR-4767	CLIP-seq
MIRT911058	hsa-miR-500a	CLIP-seq
MIRT911064	hsa-miR-548aa	CLIP-seq
MIRT2447696	hsa-miR-548c-3p	CLIP-seq
MIRT911065	hsa-miR-548s	CLIP-seq
MIRT911069	hsa-miR-593	CLIP-seq
MIRT911076	hsa-miR-940	CLIP-seq
MIRT2465122	hsa-miR-1273f	CLIP-seq
MIRT2465123	hsa-miR-1321	CLIP-seq
MIRT910984	hsa-miR-1827	CLIP-seq
MIRT2465124	hsa-miR-185	CLIP-seq
MIRT1970083	hsa-miR-1915	CLIP-seq
MIRT2447693	hsa-miR-2861	CLIP-seq
MIRT910992	hsa-miR-3122	CLIP-seq
MIRT2447694	hsa-miR-3613-3p	CLIP-seq
MIRT911004	hsa-miR-3614-5p	CLIP-seq
MIRT911009	hsa-miR-3689a-3p	CLIP-seq
MIRT911010	hsa-miR-3689c	CLIP-seq
MIRT911013	hsa-miR-3913-5p	CLIP-seq
MIRT911018	hsa-miR-3937	CLIP-seq
MIRT2465125	hsa-miR-4306	CLIP-seq
MIRT2465126	hsa-miR-4419a	CLIP-seq
MIRT2465127	hsa-miR-4510	CLIP-seq
MIRT2465128	hsa-miR-4534	CLIP-seq
MIRT2465129	hsa-miR-4644	CLIP-seq
MIRT911037	hsa-miR-4684-5p	CLIP-seq
MIRT2465130	hsa-miR-4726-3p	CLIP-seq
MIRT911044	hsa-miR-4728-5p	CLIP-seq
MIRT2465131	hsa-miR-4739	CLIP-seq
MIRT2465132	hsa-miR-4747-3p	CLIP-seq
MIRT2465133	hsa-miR-4756-5p	CLIP-seq
MIRT911049	hsa-miR-4768-3p	CLIP-seq
MIRT2447696	hsa-miR-548c-3p	CLIP-seq
MIRT2465134	hsa-miR-665	CLIP-seq
MIRT2465135	hsa-miR-765	CLIP-seq
MIRT911076	hsa-miR-940	CLIP-seq
MIRT910976	hsa-miR-10a	CLIP-seq
MIRT910977	hsa-miR-10b	CLIP-seq
MIRT1970079	hsa-miR-1234	CLIP-seq
MIRT910981	hsa-miR-125a-3p	CLIP-seq
MIRT2509209	hsa-miR-1273	CLIP-seq
MIRT1970080	hsa-miR-1281	CLIP-seq
MIRT2509210	hsa-miR-151-3p	CLIP-seq
MIRT910984	hsa-miR-1827	CLIP-seq
MIRT2509211	hsa-miR-1976	CLIP-seq
MIRT2447693	hsa-miR-2861	CLIP-seq
MIRT910992	hsa-miR-3122	CLIP-seq
MIRT2509212	hsa-miR-323-5p	CLIP-seq
MIRT1970093	hsa-miR-338-3p	CLIP-seq
MIRT911003	hsa-miR-339-5p	CLIP-seq
MIRT2447694	hsa-miR-3613-3p	CLIP-seq
MIRT911004	hsa-miR-3614-5p	CLIP-seq
MIRT911009	hsa-miR-3689a-3p	CLIP-seq
MIRT911010	hsa-miR-3689c	CLIP-seq
MIRT911013	hsa-miR-3913-5p	CLIP-seq
MIRT911014	hsa-miR-3926	CLIP-seq
MIRT911017	hsa-miR-3934	CLIP-seq
MIRT911018	hsa-miR-3937	CLIP-seq
MIRT2509213	hsa-miR-4252	CLIP-seq
MIRT2509214	hsa-miR-4279	CLIP-seq
MIRT911026	hsa-miR-4421	CLIP-seq
MIRT911027	hsa-miR-4433	CLIP-seq
MIRT2509215	hsa-miR-4456	CLIP-seq
MIRT911030	hsa-miR-4459	CLIP-seq
MIRT2509216	hsa-miR-4463	CLIP-seq
MIRT2509217	hsa-miR-4486	CLIP-seq
MIRT2509218	hsa-miR-4499	CLIP-seq
MIRT1970100	hsa-miR-4530	CLIP-seq
MIRT1970101	hsa-miR-4532	CLIP-seq
MIRT2509219	hsa-miR-4649-5p	CLIP-seq
MIRT911036	hsa-miR-4683	CLIP-seq
MIRT911037	hsa-miR-4684-5p	CLIP-seq
MIRT2447695	hsa-miR-4714-3p	CLIP-seq
MIRT2509220	hsa-miR-4722-3p	CLIP-seq
MIRT911044	hsa-miR-4728-5p	CLIP-seq
MIRT2206052	hsa-miR-4740-3p	CLIP-seq
MIRT911048	hsa-miR-4767	CLIP-seq
MIRT911049	hsa-miR-4768-3p	CLIP-seq
MIRT911051	hsa-miR-4786-5p	CLIP-seq
MIRT911052	hsa-miR-4793-3p	CLIP-seq
MIRT911053	hsa-miR-4793-5p	CLIP-seq
MIRT911054	hsa-miR-4794	CLIP-seq
MIRT911058	hsa-miR-500a	CLIP-seq
MIRT911060	hsa-miR-508-5p	CLIP-seq
MIRT911064	hsa-miR-548aa	CLIP-seq
MIRT2447696	hsa-miR-548c-3p	CLIP-seq
MIRT911065	hsa-miR-548s	CLIP-seq
MIRT911069	hsa-miR-593	CLIP-seq
MIRT911071	hsa-miR-640	CLIP-seq
MIRT2509221	hsa-miR-661	CLIP-seq
MIRT911073	hsa-miR-764	CLIP-seq
MIRT911074	hsa-miR-766	CLIP-seq
MIRT2509222	hsa-miR-876-3p	CLIP-seq
MIRT911076	hsa-miR-940	CLIP-seq
MIRT910976	hsa-miR-10a	CLIP-seq
MIRT910977	hsa-miR-10b	CLIP-seq
MIRT1970078	hsa-miR-1227	CLIP-seq
MIRT1970080	hsa-miR-1281	CLIP-seq
MIRT910984	hsa-miR-1827	CLIP-seq
MIRT2509211	hsa-miR-1976	CLIP-seq
MIRT1970086	hsa-miR-2114	CLIP-seq
MIRT2447693	hsa-miR-2861	CLIP-seq
MIRT910992	hsa-miR-3122	CLIP-seq
MIRT1970092	hsa-miR-3137	CLIP-seq
MIRT1970093	hsa-miR-338-3p	CLIP-seq
MIRT911003	hsa-miR-339-5p	CLIP-seq
MIRT2447694	hsa-miR-3613-3p	CLIP-seq
MIRT911004	hsa-miR-3614-5p	CLIP-seq
MIRT911009	hsa-miR-3689a-3p	CLIP-seq
MIRT911010	hsa-miR-3689c	CLIP-seq
MIRT911013	hsa-miR-3913-5p	CLIP-seq
MIRT911014	hsa-miR-3926	CLIP-seq
MIRT911018	hsa-miR-3937	CLIP-seq
MIRT1970096	hsa-miR-3945	CLIP-seq
MIRT1970097	hsa-miR-4253	CLIP-seq
MIRT2509214	hsa-miR-4279	CLIP-seq
MIRT911026	hsa-miR-4421	CLIP-seq
MIRT911027	hsa-miR-4433	CLIP-seq
MIRT911030	hsa-miR-4459	CLIP-seq
MIRT1970100	hsa-miR-4530	CLIP-seq
MIRT1970101	hsa-miR-4532	CLIP-seq
MIRT911036	hsa-miR-4683	CLIP-seq
MIRT911037	hsa-miR-4684-5p	CLIP-seq
MIRT2447695	hsa-miR-4714-3p	CLIP-seq
MIRT1970103	hsa-miR-4715-3p	CLIP-seq
MIRT2509220	hsa-miR-4722-3p	CLIP-seq
MIRT911044	hsa-miR-4728-5p	CLIP-seq
MIRT2206051	hsa-miR-4735-5p	CLIP-seq
MIRT911048	hsa-miR-4767	CLIP-seq
MIRT911049	hsa-miR-4768-3p	CLIP-seq
MIRT2206053	hsa-miR-4775	CLIP-seq
MIRT911051	hsa-miR-4786-5p	CLIP-seq
MIRT911052	hsa-miR-4793-3p	CLIP-seq
MIRT911053	hsa-miR-4793-5p	CLIP-seq
MIRT911054	hsa-miR-4794	CLIP-seq
MIRT911058	hsa-miR-500a	CLIP-seq
MIRT911060	hsa-miR-508-5p	CLIP-seq
MIRT1970114	hsa-miR-541	CLIP-seq
MIRT911064	hsa-miR-548aa	CLIP-seq
MIRT2447696	hsa-miR-548c-3p	CLIP-seq
MIRT911065	hsa-miR-548s	CLIP-seq
MIRT2206055	hsa-miR-590-3p	CLIP-seq
MIRT911069	hsa-miR-593	CLIP-seq
MIRT1970115	hsa-miR-654-5p	CLIP-seq
MIRT911074	hsa-miR-766	CLIP-seq
MIRT911076	hsa-miR-940	CLIP-seq

Transcription factors

Show/Hide all(1)

Transcription factor	Regulation	Reference
TFAP2A	Unknown	12408971

Show/Hide all(40)

GO ID	Ontology	Definition	Evidence	Reference
GO:0000785	Component	Chromatin	ISA
GO:0000785	Component	Chromatin	ISS
GO:0000977	Function	RNA polymerase II transcription regulatory region sequence-specific DNA binding	IEA
GO:0000977	Function	RNA polymerase II transcription regulatory region sequence-specific DNA binding	ISS
GO:0000978	Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	IBA
GO:0000978	Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	IDA	10625658
GO:0000981	Function	DNA-binding transcription factor activity, RNA polymerase II-specific	IBA
GO:0000981	Function	DNA-binding transcription factor activity, RNA polymerase II-specific	IEA
GO:0000981	Function	DNA-binding transcription factor activity, RNA polymerase II-specific	ISA
GO:0001216	Function	DNA-binding transcription activator activity	ISS
GO:0001228	Function	DNA-binding transcription activator activity, RNA polymerase II-specific	IDA	10625658
GO:0003677	Function	DNA binding	IEA
GO:0003682	Function	Chromatin binding	IEA
GO:0003700	Function	DNA-binding transcription factor activity	IEA
GO:0003700	Function	DNA-binding transcription factor activity	ISS
GO:0003700	Function	DNA-binding transcription factor activity	NAS	9390563
GO:0005515	Function	Protein binding	IPI	16189514, 22458338, 24722188, 25416956, 25910212, 26871637, 29892012, 31515488, 32296183
GO:0005634	Component	Nucleus	IBA
GO:0005634	Component	Nucleus	IEA
GO:0005634	Component	Nucleus	ISS
GO:0005667	Component	Transcription regulator complex	IEA
GO:0006355	Process	Regulation of DNA-templated transcription	IEA
GO:0006355	Process	Regulation of DNA-templated transcription	ISS
GO:0006357	Process	Regulation of transcription by RNA polymerase II	IBA
GO:0007399	Process	Nervous system development	IEA
GO:0007601	Process	Visual perception	IEA
GO:0007601	Process	Visual perception	TAS	9390563
GO:0009887	Process	Animal organ morphogenesis	TAS	9390563
GO:0016922	Function	Nuclear receptor binding	IEA
GO:0016922	Function	Nuclear receptor binding	ISS
GO:0030154	Process	Cell differentiation	IEA
GO:0043522	Function	Leucine zipper domain binding	IPI	10887186
GO:0045944	Process	Positive regulation of transcription by RNA polymerase II	IDA	10625658
GO:0045944	Process	Positive regulation of transcription by RNA polymerase II	IEA
GO:0045944	Process	Positive regulation of transcription by RNA polymerase II	IEA
GO:0045944	Process	Positive regulation of transcription by RNA polymerase II	ISS
GO:0060041	Process	Retina development in camera-type eye	IEA
GO:0061629	Function	RNA polymerase II-specific DNA-binding transcription factor binding	ISS
GO:0090575	Component	RNA polymerase II transcription regulator complex	ISS
GO:1990837	Function	Sequence-specific double-stranded DNA binding	IDA	28473536

MIM	HGNC	e!Ensembl
602225	2383	ENSG00000105392

Protein

UniProt ID

O43186

Protein name

Cone-rod homeobox protein

Protein function

Transcription factor that binds and transactivates the sequence 5'-TAATC[CA]-3' which is found upstream of several photoreceptor-specific genes, including the opsin genes. Acts synergistically with other transcription factors, such as NRL, RORB

PDB

9B8U

Family and domains

Pfam

Accession	ID	Position in sequence	Description	Type
PF00046	Homeodomain	40 → 96	Homeodomain	Domain
PF03529	TF_Otx	139 → 249	Otx1 transcription factor	Family

Tissue specificity

TISSUE SPECIFICITY: Retina.

Sequence

MMAYMNPGPHYSVNALALSGPSVDLMHQAVPYPSAPRKQRRERTTFTRSQLEELEALFAK
TQYPDVYAREEVALKINLPESRVQVWFKNRRAKCRQQRQQQKQQQQPPGGQAKARPAKRK
AGTSPRPSTDVCPDPLGISDSYSPPLPGPSGSPTTAVATVSIWSPASESPLPEAQRAGLV
ASGPSLTSAPYAMTYAPASAFCSSPSAYGSPSSYFSGLDPYLSPMVPQLGGPALSPLSGP
SVGPSLAQSPTSLSGQSYGAYSPVDSLEFKDPTGTWKFTYNPMDPLDYKDQSAWKFQIL

Sequence length

299

Interactions

View interactions

Show/Hide Causal Diseases (7)

Disease merge term	Disease name	dbSNP ID	References
Causal Diseases caused by PATHOGENIC or LIKELY PATHOGENIC variants from ClinVar only
Cone-rod dystrophy	cone-rod dystrophy 2	rs2123743692, rs104894671, rs1568626209, rs104894672, rs749738655, rs281865516, rs61748436, rs1968173024	N/A
Leber Congenital Amaurosis	leber congenital amaurosis 7, leber congenital amaurosis, Leber congenital amaurosis 1	rs786205630, rs869312175, rs61748449, rs1599991538, rs1599991611, rs61748446, rs281865515, rs281865517, rs104894673, rs1568626289	N/A
Macular dystrophy	macular dystrophy	rs1555801963	N/A
retinal dystrophy	Retinal dystrophy	rs1968165008, rs1968165080, rs2123743692, rs1968169004, rs878853383, rs1968170098, rs62636512, rs1064797247, rs104894672, rs775073228, rs771450991, rs749738655, rs1968169319, rs281865516, rs61748436 View all (5 more)	N/A
Retinitis Pigmentosa	retinitis pigmentosa	rs104894672, rs1555801989, rs771551785, rs527236062	N/A
cone-rod dystrophy	Cone-rod dystrophy	rs104894672, rs1437021651	N/A
Stargardt Disease	stargardt disease	rs1599991268, rs1599992622	N/A

Show/Hide Unknown Diseases (2)

Disease merge term	Disease name	Evidence	References	Source
Unknown Includes: (1) ClinVar NON-pathogenic variants (Uncertain, Benign, Conflicting, VUS), (2) GenCC associations, (3) GWAS associations, (4) CBGDA evidence-based associations. NOTE: Diseases with pathogenic evidence are excluded to avoid conflicts.
Diabetes	Triglyceride levels in non-type 2 diabetes	N/A	N/A	GWAS
Myopathy	Central core myopathy	N/A	N/A	ClinVar

Show/Hide Text Mining Associations (30)

Disease Name	Relationship Type	References
Associations from Text Mining Disease associations identified through Pubtator
Blindness	Associate	11328746, 29568065
Breast Neoplasms	Associate	25367122
Cone Rod Dystrophies	Associate	10984472, 25082885, 29568065, 30095615, 31203166, 31574917, 32927963, 33910785, 37239417, 9390563, 9427255, 9610810, 9792858
Disease	Associate	20513135
Eye Diseases	Associate	31626798
Factor V Deficiency	Associate	20138881
Genetic Diseases Inborn	Associate	34653402
Heart Diseases	Associate	34653402
Hemophilia A	Associate	20138881
Leber Congenital Amaurosis	Associate	10984472, 11328746, 15024725, 18936139, 19753312, 20513135, 21602930, 24066033, 28966547, 29568065, 31247521, 31626798, 32533067, 33513359, 34653402, 36369640, 37239417, 9792858 View all (3 more)
Lung Neoplasms	Associate	28592245
Macular Degeneration	Associate	33836713, 33910785, 35934205, 37322672
Macular dystrophy concentric annular	Associate	37239417
Medulloblastoma	Associate	36273157
Neoplasms	Associate	36273157
Nerve Degeneration	Associate	35934205, 9427255
Optic Atrophy Hereditary Leber	Associate	9792858
Optic Nerve Hypoplasia	Associate	33910785
Pigmented Paravenous Chorioretinal Atrophy	Associate	32927963
Refractive Errors	Associate	36137074
Retinal Degeneration	Associate	11328746, 17356515, 29568065, 31626798
Retinal Diseases	Associate	10984472, 31574917
Retinal Dystrophies	Associate	30926958, 32927963, 37239417, 9792858
Retinitis	Associate	32533067
Retinitis Pigmentosa	Associate	10984472, 11875050, 15994872, 19823680, 23559859, 29568065, 30543658, 37239417, 37322672, 9792858
Retinoblastoma	Associate	10220376, 11934446, 19686387, 25499675, 34639028
Stargardt Disease	Associate	33836713
Stomach Neoplasms	Associate	28078605
Vision Disorders	Associate	11328746
Vitreoretinopathy Proliferative	Associate	24227910

CRX (cone-rod homeobox)