Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
1337
Gene name Gene Name - the full gene name approved by the HGNC.
Cytochrome c oxidase subunit 6A1
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
COX6A1
Synonyms (NCBI Gene) Gene synonyms aliases
CMTRID, COX6A, COX6AL
Disease Acronyms (UniProt) Disease acronyms from UniProt database
CMTRID
Chromosome Chromosome number
12
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
12q24.31|12q24.2
Summary Summary of gene provided in NCBI Entrez Gene.
Cytochrome c oxidase (COX), the terminal enzyme of the mitochondrial respiratory chain, catalyzes the electron transfer from reduced cytochrome c to oxygen. It is a heteromeric complex consisting of 3 catalytic subunits encoded by mitochondrial genes and
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs377504835 G>A,C Likely-pathogenic Splice donor variant
rs587777783 TCCAC>- Pathogenic Intron variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT335441 hsa-miR-6757-5p HITS-CLIP 23313552
MIRT335443 hsa-miR-6871-5p HITS-CLIP 23313552
MIRT335440 hsa-miR-4786-5p HITS-CLIP 23313552
MIRT696673 hsa-miR-6878-5p HITS-CLIP 23313552
MIRT696672 hsa-miR-6731-5p HITS-CLIP 23313552
Transcription factors
Transcription factor Regulation Reference
MEF2A Unknown 18222924
NRF1 Unknown 10773445
YY1 Unknown 10773445
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0004129 Function Cytochrome-c oxidase activity IBA 21873635
GO:0005515 Function Protein binding IPI 17500595, 32296183, 32814053
GO:0005739 Component Mitochondrion IDA
GO:0005743 Component Mitochondrial inner membrane TAS
GO:0005751 Component Mitochondrial respiratory chain complex IV IBA 21873635
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
602072 2277 ENSG00000111775
Protein
UniProt ID P12074
Protein name Cytochrome c oxidase subunit 6A1, mitochondrial (Cytochrome c oxidase polypeptide VIa-liver) (Cytochrome c oxidase subunit VIA-liver) (COX VIa-L)
Protein function Component of the cytochrome c oxidase, the last enzyme in the mitochondrial electron transport chain which drives oxidative phosphorylation. The respiratory chain contains 3 multisubunit complexes succinate dehydrogenase (complex II, CII), ubiqu
PDB 5Z62
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF02046 COX6A 21 102 Cytochrome c oxidase subunit VIa Family
Sequence
Sequence length 109
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  Oxidative phosphorylation
Metabolic pathways
Cardiac muscle contraction
Thermogenesis
Non-alcoholic fatty liver disease
Alzheimer disease
Parkinson disease
Amyotrophic lateral sclerosis
Huntington disease
Prion disease
Pathways of neurodegeneration - multiple diseases
Chemical carcinogenesis - reactive oxygen species
Diabetic cardiomyopathy
  TP53 Regulates Metabolic Genes
Respiratory electron transport
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Charcot-marie-tooth disease CHARCOT-MARIE-TOOTH DISEASE, RECESSIVE INTERMEDIATE D, Autosomal recessive intermediate Charcot-Marie-Tooth disease type D rs137852739, rs137852737, rs118203972, rs118203974, rs267607183, rs267606878, rs121908287, rs1562648373, rs121908288, rs1368013631, rs28940291, rs28940292, rs28940293, rs28940294, rs28940295
View all (1137 more)
25152455
Peripheral neuropathy Peripheral Neuropathy rs28940294, rs137852972, rs104894715, rs121918312, rs137852667, rs2101018240, rs149782619, rs397514490, rs62636502, rs797044802, rs879253752, rs879253869, rs777219451, rs538412810, rs759785462
View all (6 more)
Unknown
Disease term Disease name Evidence References Source
Bipolar Disorder Bipolar Disorder GWAS
Breast Cancer Breast Cancer Importantly, breast cancer patients bearing PRC2 LOF mutations displayed significantly worse prognosis compared with PRC2 wild-type patients GWAS, CBGDA
Carcinoma Carcinoma GWAS
Associations from Text Mining
Disease Name Relationship Type References
Adenocarcinoma Follicular Associate 23569218
Adenocarcinoma of Lung Associate 32769881, 40331946
Carcinogenesis Associate 23569218
Charcot Marie Tooth Disease Associate 26556829
Leukoplakia Oral Associate 37454941
Neoplasms Associate 40331946
Peripheral Nervous System Diseases Associate 26556829
Spastic Paraplegia Hereditary Associate 26556829