Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
132884
Gene name Gene Name - the full gene name approved by the HGNC.
EvC ciliary complex subunit 2
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
EVC2
Synonyms (NCBI Gene) Gene synonyms aliases
LBN, WAD
Disease Acronyms (UniProt) Disease acronyms from UniProt database
WAD
Chromosome Chromosome number
4
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
4p16.2
Summary Summary of gene provided in NCBI Entrez Gene.
This gene encodes a protein that functions in bone formation and skeletal development. Mutations in this gene, as well as in a neighboring gene that lies in a head-to-head configuration, cause Ellis-van Creveld syndrome, an autosomal recessive skeletal dy
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs35103377 AA>-,A,AAA,AAAA,AAAAA Uncertain-significance, benign, conflicting-interpretations-of-pathogenicity Intron variant
rs73198165 G>A,T Benign-likely-benign, pathogenic Stop gained, synonymous variant, coding sequence variant, non coding transcript variant
rs137852924 G>A Pathogenic Stop gained, coding sequence variant, 5 prime UTR variant, non coding transcript variant
rs137852925 G>A Pathogenic Stop gained, coding sequence variant, non coding transcript variant
rs137852926 A>C Pathogenic Missense variant, coding sequence variant, 5 prime UTR variant, non coding transcript variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT646805 hsa-miR-188-5p HITS-CLIP 23824327
MIRT646804 hsa-miR-6866-3p HITS-CLIP 23824327
MIRT646803 hsa-miR-1245b-3p HITS-CLIP 23824327
MIRT646802 hsa-miR-4768-3p HITS-CLIP 23824327
MIRT646801 hsa-miR-6729-3p HITS-CLIP 23824327
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0005634 Component Nucleus HDA 21630459
GO:0005634 Component Nucleus ISS
GO:0005737 Component Cytoplasm IEA
GO:0005856 Component Cytoskeleton IEA
GO:0005929 Component Cilium ISS
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
607261 19747 ENSG00000173040
Protein
UniProt ID Q86UK5
Protein name Limbin (Ellis-van Creveld syndrome protein 2) (EVC2)
Protein function Component of the EvC complex that positively regulates ciliary Hedgehog (Hh) signaling. Plays a critical role in bone formation and skeletal development. May be involved in early embryonic morphogenesis.
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF12297 EVC2_like 237 660 Ellis van Creveld protein 2 like protein Family
Tissue specificity TISSUE SPECIFICITY: Found in the heart, placenta, lung, liver, skeletal muscle, kidney and pancreas. {ECO:0000269|PubMed:12468274}.
Sequence
MDPSGSRGRPTWVLAGGLLAVALALGGRGCLGASSRPRWRPLGAQPPRDPQVAPRSGPGL
RIPPGRSGAGPESSTQDLPCMIWPKVECCHFKTAVEAPLGMKLDKKMEVFIPLSTSAASS
GPWAHSLFAFIPSWPKKNLFKRESPITHRLYGDISREVQGTSENGVIFQKCALVSGSSEA
QTARIWLLVNNTKTTSSANLSELLLLDSIAGLTIWDSVGNRTSEGFQAFSKKFLQVGDAF
AVSYAATLQAGDLGNGESLKLPAQLTFQSSSRNRTQLKVLFSITAEENVTVLPHHGLHAA
GFFIAFLLSLVLTWAALFLMVRYQCLKGNMLTRHRVWQYESKLEPLPFTSADGVNEDLSL
NDQMIDILSSEDPGSMLQALEELEIATLNRADADLEACRTQISKDIIALLLKNLTSSGHL
SPQVERKMSAVFKKQFLLLENEIQEEYDRKMVALTAECDLETRKKMENQYQREMMAMEEA
EELLKRAGERSAVECSNLLRTLHGLEQEHLRKSLALQQEEDFAKAHRQLAVFQRNELHSI
FFTQIKSAIFKGELKPEAAKMLLQNYSKIQENVEELMDFFQASKRYHLSKRFGHREYLVQ
NLQSSETRVQGLLSTAAAQLTHLIQKHERAGYLDEDQMEMLLERAQTEVFSIKQKLDNDL

KQEKKKLHQKLITKRRRELLQKHREQRREQASVGEAFRTVEDAGQYLHQKRSLMEEHGAT
LEELQERLDQAALDDLRTLTLSLFEKATDELRRLQNSAMTQELLKRGVPWLFLQQILEEH
GKEMAARAEQLEGEERDRDQEGVQSVRQRLKDDAPEAVTEEQAELRRWEHLIFMKLCSSV
FSLSEEELLRMRQEVHGCFAQMDRSLALPKIRARVLLQQFQTAWREAEFVKLDQAVAAPE
LQQQSKVRKSRSKSKSKGELLKKCIEDKIHLCEEQASEDLVEKVRGELLRERVQRMEAQE
GGFAQSLVALQFQKASRVTETLSAYTALLSIQDLLLEELSASEMLTKSACTQILESHSRE
LQELERKLEDQLVQQEAAQQQQALASWQQWVADGPGILNEPGEVDSERQVSTVLHQALSK
SQTLLEQHQQCLREEQQNSVVLEDLLENMEADTFATLCSQELRLASYLARMAMVPGATLR
RLLSVVLPTASQPQLLALLDSATERHVDHAAESDGGAEQADVGRRRKHQSWWQALDGKLR
GDLISRGLEKMLWARKRKQSILKKTCLPLRERMIFSGKGSWPHLSLEPIGELAPVPIVGA
ETIDLLNTGEKLFIFRNPKEPEISLHVPPRKKKNFLNAKKAMRALGMD
Sequence length 1308
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  Hedgehog signaling pathway   Hedgehog 'on' state
Activation of SMO
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Acrofacial dysostosis Acrofacial dysostosis, Weyers type rs794729674, rs875989814, rs1064795108, rs1377622831
Atrial septal defect Atrial Septal Defects rs137852951, rs137852953, rs137852955, rs267607106, rs104893900, rs104893901, rs104893903, rs606231358, rs606231359, rs137852683, rs606231360, rs104893907, rs104894073, rs1585703301, rs104894074
View all (25 more)
Brachydactyly Brachydactyly rs121908949, rs28937580, rs121909082, rs104894122, rs863223289, rs863223290, rs104894121, rs1587657302, rs863223292, rs74315386, rs74315387, rs28936397, rs753691079, rs121909348, rs121917852
View all (22 more)
Colorectal cancer Colorectal Carcinoma rs137854568, rs137854573, rs137854575, rs387906234, rs121908380, rs121908702, rs267606674, rs794729661, rs121909055, rs281865417, rs267606884, rs28934575, rs587776769, rs104893815, rs587776800
View all (467 more)
Associations from Text Mining
Disease Name Relationship Type References
Amelogenesis imperfecta local hypoplastic form Associate 36672825
Anodontia Associate 36672825
Capillary Malformation Arteriovenous Malformation Associate 36672825
Ciliopathies Associate 33875766
Cleft Lip Associate 28230599
Cleft Palate Associate 20087401
Coxa Valga Associate 36672825
Developmental Dysplasia of the Hip Associate 36454308
Ellis Van Creveld Syndrome Associate 17392984, 20184732, 21199751, 23276573, 25908617, 29229899, 36672825, 36932784, 37107645, 37684519, 38531627
Genetic Diseases Inborn Associate 37107645