Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
1302
Gene name Gene Name - the full gene name approved by the HGNC.
Collagen type XI alpha 2 chain
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
COL11A2
Synonyms (NCBI Gene) Gene synonyms aliases
DFNA13, DFNB53, FBCG2, HKE5, OSMEDA, OSMEDB, PARP, STL3
Disease Acronyms (UniProt) Disease acronyms from UniProt database
DFNA13, DFNB53, FBCG2, OSMEDA, OSMEDB
Chromosome Chromosome number
6
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
6p21.32
Summary Summary of gene provided in NCBI Entrez Gene.
This gene encodes one of the two alpha chains of type XI collagen, a minor fibrillar collagen. It is located on chromosome 6 very close to but separate from the gene for retinoid X receptor beta. Type XI collagen is a heterotrimer but the third alpha chai
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs41266697 G>A Likely-benign, conflicting-interpretations-of-pathogenicity, benign-likely-benign Genic downstream transcript variant, synonymous variant, coding sequence variant
rs41268014 C>G,T Likely-benign, conflicting-interpretations-of-pathogenicity Missense variant, coding sequence variant, genic upstream transcript variant
rs113067047 C>T Conflicting-interpretations-of-pathogenicity Synonymous variant, coding sequence variant, genic downstream transcript variant
rs121912945 C>G,T Pathogenic Genic downstream transcript variant, missense variant, coding sequence variant
rs121912946 C>T Pathogenic Genic downstream transcript variant, missense variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT902436 hsa-miR-3157-5p CLIP-seq
MIRT902437 hsa-miR-3170 CLIP-seq
MIRT902438 hsa-miR-3173-5p CLIP-seq
MIRT902439 hsa-miR-4690-3p CLIP-seq
MIRT902440 hsa-miR-4734 CLIP-seq
Transcription factors
Transcription factor Regulation Reference
HMGA2 Activation 16375854
SOX10 Activation 12783851
SOX9 Activation 12783851
SP1 Activation 16734381
SP3 Activation 16734381
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0001501 Process Skeletal system development IMP 10677296
GO:0001501 Process Skeletal system development NAS 7859284, 8838804
GO:0005201 Function Extracellular matrix structural constituent IBA 21873635
GO:0005515 Function Protein binding IPI 17703188
GO:0005576 Component Extracellular region TAS
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
120290 2187 ENSG00000204248
Protein
UniProt ID P13942
Protein name Collagen alpha-2(XI) chain
Protein function May play an important role in fibrillogenesis by controlling lateral growth of collagen II fibrils.
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF02210 Laminin_G_2 92 211 Laminin G domain Domain
PF01391 Collagen 396 450 Collagen triple helix repeat (20 copies) Repeat
PF01391 Collagen 485 546 Collagen triple helix repeat (20 copies) Repeat
PF01391 Collagen 528 606 Collagen triple helix repeat (20 copies) Repeat
PF01391 Collagen 832 900 Collagen triple helix repeat (20 copies) Repeat
PF01391 Collagen 1099 1156 Collagen triple helix repeat (20 copies) Repeat
PF01391 Collagen 1114 1175 Collagen triple helix repeat (20 copies) Repeat
PF01410 COLFI 1539 1621 Fibrillar collagen C-terminal domain Family
PF01410 COLFI 1616 1734 Fibrillar collagen C-terminal domain Family
Sequence
MERCSRCHRLLLLLPLVLGLSAAPGWAGAPPVDVLRALRFPSLPDGVRRAKGICPADVAY
RVARPAQLSAPTRQLFPGGFPKDFSLLTVVRTRPGLQAPLLTLYSAQGVRQLGLELGRPV
RFLYEDQTGRPQPPSQPVFRGLSLADGKWHRVAVAVKGQSVTLIVDCKKRVTRPLPRSAR
PVLDTHGVIIFGARILDEEVFEGDVQELAIV
PGVQAAYESCEQKELECEGGQRERPQNQQ
PHRAQRSPQQQPSRLHRPQNQEPQSQPTESLYYDYEPPYYDVMTTGTTPDYQDPTPGEEE
EILESSLLPPLEEEQTDLQVPPTADRFQAEEYGEGGTDPPEGPYDYTYGYGDDYREETEL
GPALSAETAHSGAAAHGPRGLKGEKGEPAVLEPGMLVEGPPGPEGPAGLIGPPGIQGNPG
PVGDPGERGPPGRAGLPGSDGAPGPPGTSL
MLPFRFGSGGGDKGPVVAAQEAQAQAILQQ
ARLALRGPPGPMGYTGRPGPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRA
GADGAR
GMPGDPGVKGDRGFDGLPGLPGEKGHRGDTGAQGLPGPPGEDGERGDDGEIGPR
GLPGES
GPRGLLGPKGPPGIPGPPGVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLP
GPQGAIGPHGEKGPQGKPGLPGMPGSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPR
GVKGVDGIRGLKGHKGEKGEDGFPGFKGDIGVKGDRGEVGVPGSRGEDGPEGPKGRTGPT
GDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGEKGARGLSGKSGPRGER
GPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPLGPPGKD

GLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLPGTA
GKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGSPGER
GAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGVA
GEDGDKGEVGDPGQKGTKGNKGEHGPPGPPGPIGPVGQPGAAGADGEPGARGPQGHFGAK
GDEGTRGFNGPPGPIG
LQGLPGPSGEKGETGDVGP
MGPPGPPGPRGPAGPNGADGPQGPP
GGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGERGEKGESGQPGEPGPPGPKGPTGDD
GPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKR
GPAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRP
GATGQAGPPGPVGPPGLPGLRGDAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSP
GQKGEMGIPGASGPIGPGGPPGLPGPAGPKGAKGATGPGGPKGEKGVQGPPGHPGPPGEV
IQPLPIQMPKKTRRSVDGSRLMQEDEAIPTGGAPGSPGGLEEIFGSLDSLREEIEQMRRP
TGTQDSPARTCQDLKLCHPELPDGEYWVDPNQGCARDAFRVFCNFTAGGETCVTP
RDDVT
Q
FSYVDSEGSPVGVVQLTFLRLLSVSAHQDVSYPCSGAARDGPLRLRGANEDELSPETSP
YVKEFRDGCQTQQGRTVLEVRTPVLEQLPVLDASFSDLGAPPRRGGVLLGPVCF
MG
Sequence length 1736
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  Cytoskeleton in muscle cells
Protein digestion and absorption
  Collagen degradation
Collagen biosynthesis and modifying enzymes
Assembly of collagen fibrils and other multimeric structures
Non-integrin membrane-ECM interactions
MET activates PTK2 signaling
Collagen chain trimerization
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Arthritis Degenerative polyarthritis rs1594890601, rs1594882933, rs184370809, rs776489319, rs1594883470
Attention deficit hyperactivity disorder Attention deficit hyperactivity disorder rs786205019
Brachydactyly Brachydactyly rs121908949, rs28937580, rs121909082, rs104894122, rs863223289, rs863223290, rs104894121, rs1587657302, rs863223292, rs74315386, rs74315387, rs28936397, rs753691079, rs121909348, rs121917852
View all (22 more)
Connective tissue disease Connective Tissue Diseases rs5742905, rs80338688, rs80356506, rs104894800, rs104894948, rs28931614, rs121913482, rs28933068, rs121913483, rs137854464, rs121912870, rs387906980, rs587777352, rs527236145, rs189754995
View all (12 more)
22246659
Unknown
Disease term Disease name Evidence References Source
Coronary heart disease Coronary heart disease 21347282 ClinVar
Otospondylomegaepiphyseal Dysplasia otospondylomegaepiphyseal dysplasia, autosomal dominant, otospondylomegaepiphyseal dysplasia, autosomal recessive GenCC
Asthma Asthma GWAS
Hypothyroidism Hypothyroidism GWAS
Associations from Text Mining
Disease Name Relationship Type References
Adenocarcinoma of Lung Associate 38182570
Aortic Valve Insufficiency Stimulate 34148301
Arthritis Rheumatoid Associate 35363175
Ataxia Telangiectasia Associate 37524790
Breast Neoplasms Associate 19242112, 19589159, 22915752, 22987487, 27708239, 28765325, 29587668, 32657779, 33121449, 35279688, 37298108, 37756561, 39243563, 40421962
Burkitt Lymphoma Associate 36012375
Calcinosis Cutis Associate 32657779
Carcinoma Non Small Cell Lung Associate 21801305
Carcinoma Ovarian Epithelial Associate 33352687
Cartilage Diseases Associate 26973327