Gene Details | GeDiPNet - Complete Gene Info, Disease Associations & Pathways

Gene Gene information from NCBI Gene database. Gene miRNA Gene ontology Other IDs Protein Associated diseases
Entrez ID	128434
Gene name	V-set and transmembrane domain containing 2 like
Gene symbol	VSTM2L
Synonyms (NCBI Gene)	C20orf102dJ1118M15.2
Chromosome	20
Chromosome location	20q11.23

Show/Hide all (84)

miRTarBase ID	miRNA	Experiments	Reference
MIRT017544	hsa-miR-335-5p	Microarray	18185580
MIRT1487864	hsa-miR-1193	CLIP-seq
MIRT1487865	hsa-miR-1321	CLIP-seq
MIRT1487866	hsa-miR-1911	CLIP-seq
MIRT1487867	hsa-miR-3652	CLIP-seq
MIRT1487868	hsa-miR-3936	CLIP-seq
MIRT1487869	hsa-miR-4266	CLIP-seq
MIRT1487870	hsa-miR-4283	CLIP-seq
MIRT1487871	hsa-miR-4419a	CLIP-seq
MIRT1487872	hsa-miR-4430	CLIP-seq
MIRT1487873	hsa-miR-4489	CLIP-seq
MIRT1487874	hsa-miR-4505	CLIP-seq
MIRT1487875	hsa-miR-4510	CLIP-seq
MIRT1487876	hsa-miR-4663	CLIP-seq
MIRT1487877	hsa-miR-4666-5p	CLIP-seq
MIRT1487878	hsa-miR-4695-5p	CLIP-seq
MIRT1487879	hsa-miR-4728-3p	CLIP-seq
MIRT1487880	hsa-miR-4739	CLIP-seq
MIRT1487881	hsa-miR-4756-5p	CLIP-seq
MIRT1487882	hsa-miR-4779	CLIP-seq
MIRT1487883	hsa-miR-485-5p	CLIP-seq
MIRT1487884	hsa-miR-647	CLIP-seq
MIRT1487885	hsa-miR-765	CLIP-seq
MIRT2146810	hsa-miR-1207-5p	CLIP-seq
MIRT2146811	hsa-miR-1293	CLIP-seq
MIRT2146812	hsa-miR-1343	CLIP-seq
MIRT2146813	hsa-miR-1909	CLIP-seq
MIRT2146814	hsa-miR-3189-5p	CLIP-seq
MIRT2146815	hsa-miR-4483	CLIP-seq
MIRT2146816	hsa-miR-4758-3p	CLIP-seq
MIRT2146817	hsa-miR-4763-3p	CLIP-seq
MIRT2367353	hsa-miR-1208	CLIP-seq
MIRT2367354	hsa-miR-1224-3p	CLIP-seq
MIRT2367355	hsa-miR-1234	CLIP-seq
MIRT2367356	hsa-miR-1243	CLIP-seq
MIRT2367357	hsa-miR-1260	CLIP-seq
MIRT2367358	hsa-miR-1260b	CLIP-seq
MIRT2367359	hsa-miR-1280	CLIP-seq
MIRT2146811	hsa-miR-1293	CLIP-seq
MIRT2367360	hsa-miR-1297	CLIP-seq
MIRT1487865	hsa-miR-1321	CLIP-seq
MIRT2367361	hsa-miR-150	CLIP-seq
MIRT2367362	hsa-miR-26a	CLIP-seq
MIRT2367363	hsa-miR-26b	CLIP-seq
MIRT2367364	hsa-miR-3127-5p	CLIP-seq
MIRT2367365	hsa-miR-3165	CLIP-seq
MIRT2367366	hsa-miR-361-3p	CLIP-seq
MIRT1487867	hsa-miR-3652	CLIP-seq
MIRT1487868	hsa-miR-3936	CLIP-seq
MIRT2367367	hsa-miR-3978	CLIP-seq
MIRT2367368	hsa-miR-4270	CLIP-seq
MIRT1487872	hsa-miR-4430	CLIP-seq
MIRT2367369	hsa-miR-4441	CLIP-seq
MIRT2367370	hsa-miR-4463	CLIP-seq
MIRT2367371	hsa-miR-4465	CLIP-seq
MIRT2146815	hsa-miR-4483	CLIP-seq
MIRT2367372	hsa-miR-4494	CLIP-seq
MIRT1487874	hsa-miR-4505	CLIP-seq
MIRT2367373	hsa-miR-4651	CLIP-seq
MIRT1487876	hsa-miR-4663	CLIP-seq
MIRT2367374	hsa-miR-4687-5p	CLIP-seq
MIRT2367375	hsa-miR-4699-5p	CLIP-seq
MIRT2367376	hsa-miR-4713-5p	CLIP-seq
MIRT1487879	hsa-miR-4728-3p	CLIP-seq
MIRT2367377	hsa-miR-4728-5p	CLIP-seq
MIRT1487880	hsa-miR-4739	CLIP-seq
MIRT1487881	hsa-miR-4756-5p	CLIP-seq
MIRT2367378	hsa-miR-4757-5p	CLIP-seq
MIRT2367379	hsa-miR-532-3p	CLIP-seq
MIRT2367380	hsa-miR-598	CLIP-seq
MIRT2367381	hsa-miR-608	CLIP-seq
MIRT1487884	hsa-miR-647	CLIP-seq
MIRT2367382	hsa-miR-662	CLIP-seq
MIRT2396876	hsa-miR-1291	CLIP-seq
MIRT2367361	hsa-miR-150	CLIP-seq
MIRT1487867	hsa-miR-3652	CLIP-seq
MIRT2396877	hsa-miR-4292	CLIP-seq
MIRT2396878	hsa-miR-4323	CLIP-seq
MIRT1487871	hsa-miR-4419a	CLIP-seq
MIRT1487872	hsa-miR-4430	CLIP-seq
MIRT1487874	hsa-miR-4505	CLIP-seq
MIRT1487875	hsa-miR-4510	CLIP-seq
MIRT2396879	hsa-miR-486-3p	CLIP-seq
MIRT1487884	hsa-miR-647	CLIP-seq

Show/Hide all (7)

GO ID	Ontology	Definition	Evidence	Reference
GO:0005515	Function	Protein binding	IPI	16713569, 21393573, 25814554, 32814053
GO:0005576	Component	Extracellular region	IDA	21393573
GO:0005576	Component	Extracellular region	IEA
GO:0005737	Component	Cytoplasm	IDA	21393573
GO:0016020	Component	Membrane	IBA
GO:0043524	Process	Negative regulation of neuron apoptotic process	IDA	21393573
GO:0043524	Process	Negative regulation of neuron apoptotic process	IEA

MIM	HGNC	e!Ensembl
616537	16096	ENSG00000132821

Q96N03

Protein name

V-set and transmembrane domain-containing protein 2-like protein

Family and domains

Pfam

Accession	ID	Position in sequence	Description	Type
PF07686	V-set	45 → 164	Immunoglobulin V-set domain	Domain

Sequence

MGAPLAVALGALHYLALFLQLGGATRPAGHAPWDNHVSGHALFTETPHDMTARTGEDVEM
ACSFRGSGSPSYSLEIQWWYVRSHRDWTDKQAWASNQLKASQQEDAGKEATKISVVKVVG
SNISHKLRLSRVKPTDEGTYECRVIDFSDGKARHHKVKAYLRVQPGENSVLHLPEAPPAA
PAPPPPKPGKELRKRSVDQEACSL

Sequence length

204

Interactions

View interactions

Evidence Score: ★☆☆☆☆ Gene-disease association found in Text Mining only ★★☆☆☆ Found in Text Mining and Unknown/Other Associations ★★★☆☆ Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆ ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★ ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)

Show/Hide Unknown Diseases (2)

Phenotype Name	Clinical Significance	Source	Evidence Score
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
RESTLESS LEGS SYNDROME	—	GWAS catalog	★★★★★ ★★☆☆☆ Found in Text Mining + Unknown/Other Associations
TRIGEMINAL NERVE DISEASE	—	GWAS catalog	★★★★★ ★★☆☆☆ Found in Text Mining + Unknown/Other Associations

Show/Hide Text Mining Associations (5)

Disease Name	Relationship Type	References	Evidence Score
Associations from Text MiningDisease associations identified through Pubtator
Neoplasm Metastasis	Associate	36790659	★★★★★ ★☆☆☆☆ Found in Text Mining only
Neoplasms	Associate	33506057	★★★★★ ★☆☆☆☆ Found in Text Mining only
Ovarian Neoplasms	Associate	35741755	★★★★★ ★☆☆☆☆ Found in Text Mining only
Rectal Neoplasms	Associate	33506057	★★★★★ ★☆☆☆☆ Found in Text Mining only
Stomach Neoplasms	Associate	36790659	★★★★★ ★☆☆☆☆ Found in Text Mining only

VSTM2L (V-set and transmembrane domain containing 2 like)