Gene Gene information from NCBI Gene database.
Entrez ID 121512
Gene name FYVE, RhoGEF and PH domain containing 4
Gene symbol FGD4
Synonyms (NCBI Gene)
CMT4HFRABPZFYVE6
Chromosome 12
Chromosome location 12p11.21
Summary This gene encodes a protein that is involved in the regulation of the actin cytoskeleton and cell shape. This protein contains an actin filament-binding domain, which together with its Dbl homology domain and one of its pleckstrin homology domains, can fo
SNPs SNP information provided by dbSNP.
24
SNP ID Visualize variation Clinical significance Consequence
rs61753359 G>A,T Conflicting-interpretations-of-pathogenicity, uncertain-significance Missense variant, genic downstream transcript variant, coding sequence variant
rs63749871 T>C,G Pathogenic, uncertain-significance Missense variant, initiator codon variant, non coding transcript variant, coding sequence variant, 5 prime UTR variant
rs118203972 C>T Pathogenic Non coding transcript variant, stop gained, upstream transcript variant, 5 prime UTR variant, genic upstream transcript variant, coding sequence variant
rs118203973 G>T Pathogenic Coding sequence variant, stop gained, genic downstream transcript variant
rs118203974 C>T Pathogenic Non coding transcript variant, stop gained, intron variant, 5 prime UTR variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
574
miRTarBase ID miRNA Experiments Reference
MIRT709066 hsa-miR-7153-3p HITS-CLIP 19536157
MIRT709065 hsa-miR-490-5p HITS-CLIP 19536157
MIRT709064 hsa-miR-339-5p HITS-CLIP 19536157
MIRT709063 hsa-miR-4742-3p HITS-CLIP 19536157
MIRT709062 hsa-miR-197-3p HITS-CLIP 19536157
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
27
GO ID Ontology Definition Evidence Reference
GO:0001726 Component Ruffle ISS
GO:0003779 Function Actin binding IEA
GO:0005085 Function Guanyl-nucleotide exchange factor activity IBA
GO:0005085 Function Guanyl-nucleotide exchange factor activity IEA
GO:0005085 Function Guanyl-nucleotide exchange factor activity ISS
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
611104 19125 ENSG00000139132
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q96M96
Protein name FYVE, RhoGEF and PH domain-containing protein 4 (Actin filament-binding protein frabin) (FGD1-related F-actin-binding protein) (Zinc finger FYVE domain-containing protein 6)
Protein function Activates CDC42, a member of the Ras-like family of Rho- and Rac proteins, by exchanging bound GDP for free GTP. Plays a role in regulating the actin cytoskeleton and cell shape. Activates MAPK8 (By similarity). {ECO:0000250, ECO:0000269|PubMed:
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00621 RhoGEF 210 391 RhoGEF domain Domain
PF00169 PH 423 521 PH domain Domain
PF01363 FYVE 554 620 FYVE zinc finger Domain
PF00169 PH 627 740 PH domain Domain
Tissue specificity TISSUE SPECIFICITY: Expressed in different tissues, including brain, cerebellum, peripheral nerve, skeletal muscle, heart, uterus, placenta and testis. {ECO:0000269|PubMed:17564959}.
Sequence
Sequence length 766
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  Reactome
    NRAGE signals death through JNK
Rho GTPase cycle
G alpha (12/13) signalling events
Associated diseases Disease associations from ClinVar categorized as Causal (Pathogenic/Likely Pathogenic) or Unknown.
773
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Charcot-Marie-Tooth disease Pathogenic rs751035912, rs63749871 RCV000789112
RCV000789104
Charcot-Marie-Tooth disease type 4 Pathogenic; Likely pathogenic rs2136432373, rs751404531, rs1401878479, rs2136608035, rs2137076976, rs1951100155, rs2136763097, rs1948478259, rs1948408994, rs899737461, rs2136932206, rs118203972, rs118203974, rs1949691247, rs1060501904
View all (14 more)
RCV001389272
RCV001385811
RCV001389522
RCV005057496
RCV001939418
RCV001960633
RCV001994195
RCV002011371
RCV001956214
RCV001897003
RCV001985156
RCV001851524
RCV001248027
RCV003095588
RCV002815496
RCV002815959
RCV003028617
RCV005090295
RCV003744299
RCV003744269
RCV000465770
RCV000474290
RCV001047299
RCV003581683
RCV000695680
RCV000654164
RCV000691156
RCV000807063
RCV001037627
RCV001062320
RCV001052182
Charcot-Marie-Tooth disease type 4H Pathogenic; Likely pathogenic rs2136608035, rs2136932206, rs118203972, rs118203974, rs2540702114, rs886041200, rs751035912, rs771606350, rs63749871, rs1565869918, rs1565942358 RCV001542680
RCV005397189
RCV000001066
RCV000001071
RCV002569459
RCV003988839
RCV003447139
RCV002289701
RCV000032001
RCV000782173
RCV000782174
Unknown Diseases with uncertain, conflicting, or no pathogenic evidence in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Acute myeloid leukemia Benign; Likely benign rs12299270, rs62642552, rs76834265 RCV005917053
RCV005893085
RCV005902308
Cervical cancer Likely benign rs188648275 RCV005893084
Cholangiocarcinoma Benign rs12299270, rs17539792, rs17539848 RCV005917057
RCV005923807
RCV005923810
FGD4-related disorder Benign; Conflicting classifications of pathogenicity; Likely benign rs17537634, rs138160928, rs144693221, rs61753359, rs61748364, rs188104446, rs904582, rs764489415, rs16920084, rs34555341, rs60803891, rs145115430, rs771558628 RCV003921349
RCV003982919
RCV003917576
RCV003937521
RCV003907561
RCV004757971
RCV003917661
RCV003943675
RCV003940176
RCV003940175
RCV003930308
RCV003960079
RCV003945682
Associations from Text MiningDisease associations identified through Pubtator
Disease Name Relationship Type References
Breast Neoplasms Associate 23380069, 27736846
Charcot Marie Tooth Disease Associate 17564972, 19221294, 34169998
Charcot Marie Tooth Disease Type 4H Associate 19221294, 34148957, 38108359
Chemical and Drug Induced Liver Injury Associate 33399082
Esophageal Squamous Cell Carcinoma Associate 33709789
Foot Deformities Associate 21840889
Hereditary Sensory and Motor Neuropathy Associate 30558664
Leukopenia Associate 33709789
Nasopharyngeal Carcinoma Associate 22589722
Neoplasms Associate 30558664