Gene Details | GeDiPNet - Complete Gene Info, Disease Associations & Pathways

Gene Gene SNPs miRNA Gene ontology Other IDs Protein Pathways Associated diseases
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.	1186
Gene name Gene Name - the full gene name approved by the HGNC.	Chloride voltage-gated channel 7
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.	CLCN7
Synonyms (NCBI Gene) Gene synonyms aliases	CLC-7, CLC7, HOD, OPTA2, OPTB4, PPP1R63
Chromosome Chromosome number	16
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.	16p13.3
Summary Summary of gene provided in NCBI Entrez Gene.	The product of this gene belongs to the CLC chloride channel family of proteins. Chloride channels play important roles in the plasma membrane and in intracellular organelles. This gene encodes chloride channel 7. Defects in this gene are the cause of ost

Show/Hide all(15)

SNP ID	Visualize variation	Clinical significance	Consequence
rs121434432	G>A	Pathogenic	Coding sequence variant, stop gained
rs121434433	C>G,T	Pathogenic	Coding sequence variant, missense variant
rs121434434	A>G	Pathogenic	Coding sequence variant, missense variant
rs121434435	G>A	Pathogenic	Coding sequence variant, missense variant
rs121434436	T>A	Pathogenic	Coding sequence variant, missense variant
rs387907576	T>C	Likely-pathogenic, pathogenic	Missense variant, coding sequence variant
rs397515539	C>T	Pathogenic	Missense variant, coding sequence variant
rs757788894	C>T	Likely-pathogenic	Missense variant, coding sequence variant
rs760956030	C>T	Pathogenic	Missense variant, coding sequence variant
rs922106856	C>T	Pathogenic	Intron variant
rs1057517718	T>C	Pathogenic	Coding sequence variant, missense variant
rs1163577336	C>T	Likely-pathogenic	Coding sequence variant, missense variant
rs1322266202	AA>-	Likely-pathogenic	Coding sequence variant, frameshift variant
rs1555465963	A>G	Likely-pathogenic	Missense variant, coding sequence variant
rs1567263375	C>A	Pathogenic	Splice donor variant

Show/Hide all(152)

miRTarBase ID	miRNA	Experiments	Reference
MIRT045747	hsa-miR-125a-5p	CLASH	23622248
MIRT039129	hsa-miR-769-3p	CLASH	23622248
MIRT617790	hsa-miR-8485	HITS-CLIP	23824327
MIRT617789	hsa-miR-370-5p	HITS-CLIP	23824327
MIRT617787	hsa-miR-4308	HITS-CLIP	23824327
MIRT617788	hsa-miR-4292	HITS-CLIP	23824327
MIRT617786	hsa-miR-6791-5p	HITS-CLIP	23824327
MIRT617785	hsa-miR-3151-3p	HITS-CLIP	23824327
MIRT617784	hsa-miR-377-3p	HITS-CLIP	23824327
MIRT486540	hsa-miR-3929	PAR-CLIP	23592263
MIRT486539	hsa-miR-4419b	PAR-CLIP	23592263
MIRT486538	hsa-miR-4478	PAR-CLIP	23592263
MIRT486537	hsa-miR-665	PAR-CLIP	23592263
MIRT486536	hsa-miR-3184-5p	PAR-CLIP	23592263
MIRT486535	hsa-miR-423-5p	PAR-CLIP	23592263
MIRT486534	hsa-miR-1914-3p	PAR-CLIP	23592263
MIRT486532	hsa-miR-5194	PAR-CLIP	23592263
MIRT486533	hsa-miR-6738-5p	PAR-CLIP	23592263
MIRT486531	hsa-miR-4706	PAR-CLIP	23592263
MIRT486530	hsa-miR-4749-5p	PAR-CLIP	23592263
MIRT486529	hsa-miR-7160-5p	PAR-CLIP	23592263
MIRT486528	hsa-miR-6077	PAR-CLIP	23592263
MIRT486527	hsa-miR-1908-5p	PAR-CLIP	23592263
MIRT486526	hsa-miR-663a	PAR-CLIP	23592263
MIRT486525	hsa-miR-6787-5p	PAR-CLIP	23592263
MIRT486524	hsa-miR-3191-3p	PAR-CLIP	23592263
MIRT486523	hsa-miR-3180	PAR-CLIP	23592263
MIRT486522	hsa-miR-3180-3p	PAR-CLIP	23592263
MIRT486521	hsa-miR-3196	PAR-CLIP	23592263
MIRT486520	hsa-miR-6816-5p	PAR-CLIP	23592263
MIRT486518	hsa-miR-6734-5p	PAR-CLIP	23592263
MIRT617790	hsa-miR-8485	HITS-CLIP	23824327
MIRT617789	hsa-miR-370-5p	HITS-CLIP	23824327
MIRT617787	hsa-miR-4308	HITS-CLIP	23824327
MIRT617788	hsa-miR-4292	HITS-CLIP	23824327
MIRT617786	hsa-miR-6791-5p	HITS-CLIP	23824327
MIRT617785	hsa-miR-3151-3p	HITS-CLIP	23824327
MIRT617784	hsa-miR-377-3p	HITS-CLIP	23824327
MIRT486540	hsa-miR-3929	PAR-CLIP	23592263
MIRT486539	hsa-miR-4419b	PAR-CLIP	23592263
MIRT486538	hsa-miR-4478	PAR-CLIP	23592263
MIRT486537	hsa-miR-665	PAR-CLIP	23592263
MIRT486536	hsa-miR-3184-5p	PAR-CLIP	23592263
MIRT486535	hsa-miR-423-5p	PAR-CLIP	23592263
MIRT486534	hsa-miR-1914-3p	PAR-CLIP	23592263
MIRT486532	hsa-miR-5194	PAR-CLIP	23592263
MIRT486533	hsa-miR-6738-5p	PAR-CLIP	23592263
MIRT486531	hsa-miR-4706	PAR-CLIP	23592263
MIRT486530	hsa-miR-4749-5p	PAR-CLIP	23592263
MIRT486529	hsa-miR-7160-5p	PAR-CLIP	23592263
MIRT486528	hsa-miR-6077	PAR-CLIP	23592263
MIRT486527	hsa-miR-1908-5p	PAR-CLIP	23592263
MIRT486526	hsa-miR-663a	PAR-CLIP	23592263
MIRT486525	hsa-miR-6787-5p	PAR-CLIP	23592263
MIRT486524	hsa-miR-3191-3p	PAR-CLIP	23592263
MIRT486523	hsa-miR-3180	PAR-CLIP	23592263
MIRT486522	hsa-miR-3180-3p	PAR-CLIP	23592263
MIRT486521	hsa-miR-3196	PAR-CLIP	23592263
MIRT486520	hsa-miR-6816-5p	PAR-CLIP	23592263
MIRT486518	hsa-miR-6734-5p	PAR-CLIP	23592263
MIRT894854	hsa-miR-1321	CLIP-seq
MIRT894855	hsa-miR-3120-5p	CLIP-seq
MIRT894856	hsa-miR-3162-5p	CLIP-seq
MIRT894857	hsa-miR-3651	CLIP-seq
MIRT894858	hsa-miR-377	CLIP-seq
MIRT894859	hsa-miR-3940-3p	CLIP-seq
MIRT894860	hsa-miR-4739	CLIP-seq
MIRT894861	hsa-miR-4756-5p	CLIP-seq
MIRT894862	hsa-miR-602	CLIP-seq
MIRT894863	hsa-miR-760	CLIP-seq
MIRT894864	hsa-miR-1293	CLIP-seq
MIRT894865	hsa-miR-1294	CLIP-seq
MIRT894854	hsa-miR-1321	CLIP-seq
MIRT894866	hsa-miR-1915	CLIP-seq
MIRT894867	hsa-miR-1972	CLIP-seq
MIRT894868	hsa-miR-298	CLIP-seq
MIRT894855	hsa-miR-3120-5p	CLIP-seq
MIRT894869	hsa-miR-3154	CLIP-seq
MIRT894870	hsa-miR-3167	CLIP-seq
MIRT894871	hsa-miR-3184	CLIP-seq
MIRT894872	hsa-miR-3616-3p	CLIP-seq
MIRT894873	hsa-miR-3620	CLIP-seq
MIRT894874	hsa-miR-4316	CLIP-seq
MIRT894875	hsa-miR-4419a	CLIP-seq
MIRT894876	hsa-miR-4436b-3p	CLIP-seq
MIRT894877	hsa-miR-4483	CLIP-seq
MIRT894878	hsa-miR-4497	CLIP-seq
MIRT894879	hsa-miR-4510	CLIP-seq
MIRT894880	hsa-miR-4656	CLIP-seq
MIRT894881	hsa-miR-4677-3p	CLIP-seq
MIRT894882	hsa-miR-4690-3p	CLIP-seq
MIRT894883	hsa-miR-4721	CLIP-seq
MIRT894884	hsa-miR-4726-3p	CLIP-seq
MIRT894860	hsa-miR-4739	CLIP-seq
MIRT894885	hsa-miR-4755-3p	CLIP-seq
MIRT894861	hsa-miR-4756-5p	CLIP-seq
MIRT894886	hsa-miR-4779	CLIP-seq
MIRT894887	hsa-miR-485-5p	CLIP-seq
MIRT894862	hsa-miR-602	CLIP-seq
MIRT894888	hsa-miR-615-5p	CLIP-seq
MIRT894863	hsa-miR-760	CLIP-seq
MIRT894889	hsa-miR-876-5p	CLIP-seq
MIRT894864	hsa-miR-1293	CLIP-seq
MIRT894854	hsa-miR-1321	CLIP-seq
MIRT1965384	hsa-miR-223	CLIP-seq
MIRT894856	hsa-miR-3162-5p	CLIP-seq
MIRT894871	hsa-miR-3184	CLIP-seq
MIRT1965385	hsa-miR-342-5p	CLIP-seq
MIRT894873	hsa-miR-3620	CLIP-seq
MIRT1965386	hsa-miR-4277	CLIP-seq
MIRT894875	hsa-miR-4419a	CLIP-seq
MIRT894877	hsa-miR-4483	CLIP-seq
MIRT894879	hsa-miR-4510	CLIP-seq
MIRT1965387	hsa-miR-4632	CLIP-seq
MIRT1965388	hsa-miR-4664-5p	CLIP-seq
MIRT1965389	hsa-miR-4667-5p	CLIP-seq
MIRT1965390	hsa-miR-4700-5p	CLIP-seq
MIRT894860	hsa-miR-4739	CLIP-seq
MIRT894861	hsa-miR-4756-5p	CLIP-seq
MIRT1965391	hsa-miR-4763-5p	CLIP-seq
MIRT894886	hsa-miR-4779	CLIP-seq
MIRT894887	hsa-miR-485-5p	CLIP-seq
MIRT1965392	hsa-miR-937	CLIP-seq
MIRT2201346	hsa-miR-150	CLIP-seq
MIRT2201347	hsa-miR-3647-3p	CLIP-seq
MIRT2201348	hsa-miR-3662	CLIP-seq
MIRT2201349	hsa-miR-499-3p	CLIP-seq
MIRT2201350	hsa-miR-499a-3p	CLIP-seq
MIRT894862	hsa-miR-602	CLIP-seq
MIRT2201351	hsa-miR-767-3p	CLIP-seq
MIRT1965387	hsa-miR-4632	CLIP-seq
MIRT894887	hsa-miR-485-5p	CLIP-seq
MIRT2678235	hsa-miR-1265	CLIP-seq
MIRT2678236	hsa-miR-15a	CLIP-seq
MIRT2678237	hsa-miR-15b	CLIP-seq
MIRT2678238	hsa-miR-16	CLIP-seq
MIRT2678239	hsa-miR-1908	CLIP-seq
MIRT2678240	hsa-miR-195	CLIP-seq
MIRT2678241	hsa-miR-214	CLIP-seq
MIRT894871	hsa-miR-3184	CLIP-seq
MIRT2678242	hsa-miR-3191	CLIP-seq
MIRT2678243	hsa-miR-3605-5p	CLIP-seq
MIRT2678244	hsa-miR-3619-5p	CLIP-seq
MIRT2678245	hsa-miR-424	CLIP-seq
MIRT894876	hsa-miR-4436b-3p	CLIP-seq
MIRT2678246	hsa-miR-4508	CLIP-seq
MIRT2678247	hsa-miR-4687-5p	CLIP-seq
MIRT2678248	hsa-miR-4764-5p	CLIP-seq
MIRT2678249	hsa-miR-486-3p	CLIP-seq
MIRT2678250	hsa-miR-497	CLIP-seq
MIRT2678251	hsa-miR-663	CLIP-seq
MIRT2678252	hsa-miR-761	CLIP-seq

Show/Hide all(27)

GO ID	Ontology	Definition	Evidence	Reference
GO:0000166	Function	Nucleotide binding	IEA
GO:0005254	Function	Chloride channel activity	IEA
GO:0005254	Function	Chloride channel activity	TAS	8543009
GO:0005515	Function	Protein binding	IPI	32296183, 32814053, 32851177, 33961781, 35271311
GO:0005524	Function	ATP binding	IEA
GO:0005764	Component	Lysosome	IEA
GO:0005765	Component	Lysosomal membrane	HDA	17897319
GO:0005765	Component	Lysosomal membrane	IBA
GO:0005765	Component	Lysosomal membrane	IDA	21527911
GO:0005765	Component	Lysosomal membrane	IEA
GO:0005765	Component	Lysosomal membrane	TAS
GO:0006811	Process	Monoatomic ion transport	IEA
GO:0006821	Process	Chloride transport	IEA
GO:0009268	Process	Response to pH	IEA
GO:0015108	Function	Chloride transmembrane transporter activity	IEA
GO:0015297	Function	Antiporter activity	IEA
GO:0016020	Component	Membrane	HDA	19946888
GO:0016020	Component	Membrane	IEA
GO:0030321	Process	Transepithelial chloride transport	IBA
GO:0030321	Process	Transepithelial chloride transport	IDA	32851177
GO:0034707	Component	Chloride channel complex	IBA
GO:0034707	Component	Chloride channel complex	IPI	32851177
GO:0055085	Process	Transmembrane transport	IEA
GO:0062158	Function	Chloride:proton antiporter activity	IBA
GO:0062158	Function	Chloride:proton antiporter activity	IEA
GO:1902476	Process	Chloride transmembrane transport	IBA
GO:1902600	Process	Proton transmembrane transport	IEA

MIM	HGNC	e!Ensembl
602727	2025	ENSG00000103249

Protein

UniProt ID

P51798

Protein name

H(+)/Cl(-) exchange transporter 7 (Chloride channel 7 alpha subunit) (Chloride channel protein 7) (ClC-7)

Protein function

Slowly voltage-gated channel mediating the exchange of chloride ions against protons (PubMed:18449189, PubMed:21527911). Functions as antiporter and contributes to the acidification of the lysosome lumen and may be involved in maintaining lysoso

PDB

7BXU , 7CQ5 , 7CQ6 , 7CQ7 , 7JM7 , 8HVT

Family and domains

Pfam

Accession	ID	Position in sequence	Description	Type
PF00654	Voltage_CLC	185 → 596	Voltage gated chloride channel	Family
PF00571	CBS	627 → 690	CBS domain	Domain
PF00571	CBS	737 → 793	CBS domain	Domain

Tissue specificity

TISSUE SPECIFICITY: Brain and kidney. {ECO:0000269|PubMed:31155284}.

Sequence

MANVSKKVSWSGRDRDDEEAAPLLRRTARPGGGTPLLNGAGPGAARQSPRSALFRVGHMS
SVELDDELLDPDMDPPHPFPKEIPHNEKLLSLKYESLDYDNSENQLFLEEERRINHTAFR
TVEIKRWVICALIGILTGLVACFIDIVVENLAGLKYRVIKGNIDKFTEKGGLSFSLLLWA
TLNAAFVLVGSVIVAFIEPVAAGSGIPQIKCFLNGVKIPHVVRLKTLVIKVSGVILSVVG
GLAVGKEGPMIHSGSVIAAGISQGRSTSLKRDFKIFEYFRRDTEKRDFVSAGAAAGVSAA
FGAPVGGVLFSLEEGASFWNQFLTWRIFFASMISTFTLNFVLSIYHGNMWDLSSPGLINF
GRFDSEKMAYTIHEIPVFIAMGVVGGVLGAVFNALNYWLTMFRIRYIHRPCLQVIEAVLV
AAVTATVAFVLIYSSRDCQPLQGGSMSYPLQLFCADGEYNSMAAAFFNTPEKSVVSLFHD
PPGSYNPLTLGLFTLVYFFLACWTYGLTVSAGVFIPSLLIGAAWGRLFGISLSYLTGAAI
WADPGKYALMGAAAQLGGIVRMTLSLTVIMMEATSNVTYGFPIMLVLMTAKIVGDVFIEG
LYDMHIQLQSVPFLHWEAPVTSHSLTAREVMSTPVTCLRRREKVGVIVDVLSDTASNHNG
FPVVEHADDTQPARLQGLILRSQLIVLLKHKVFVERSNLGLVQRRLRLKDFRDAYPRFPP
IQSIHVSQDERECTMDLSEFMNPSPYTVPQEASLPRVFKLFRALGLRHLVVVDNRNQVVG
LVTRKDLARYRLGKRGLEELSLAQT

Sequence length

805

Interactions

View interactions

	Reactome
			Stimuli-sensing channels

Show/Hide Causal Diseases (1)

Disease merge term	Disease name	dbSNP ID	References
Causal Diseases caused by PATHOGENIC or LIKELY PATHOGENIC variants from ClinVar only
Osteopetrosis	Autosomal dominant osteopetrosis 2, Autosomal recessive osteopetrosis 4	rs397515539, rs760956030, rs121434432, rs757788894, rs121434433, rs367567630, rs121434434, rs1567263375, rs121434435, rs922106856, rs1064794323, rs121434436, rs387907576	N/A

Show/Hide Unknown Diseases (1)

Disease merge term	Disease name	Evidence	References	Source
Unknown Includes: (1) ClinVar NON-pathogenic variants (Uncertain, Benign, Conflicting, VUS), (2) GenCC associations, (3) GWAS associations, (4) CBGDA evidence-based associations. NOTE: Diseases with pathogenic evidence are excluded to avoid conflicts.
Connective Tissue Disease	Connective tissue disorder	N/A	N/A	ClinVar

Show/Hide Text Mining Associations (33)

Disease Name	Relationship Type	References
Associations from Text Mining Disease associations identified through Pubtator
Acidosis Renal Tubular	Associate	27540713
ACTH Secreting Pituitary Adenoma	Associate	35902893
Anemia Myelophthisic	Associate	36162965
Anterior Cruciate Ligament Injuries	Associate	35902893
Blindness	Associate	27540713
Bone Marrow Neoplasms	Associate	34545712
Bone Resorption	Associate	16813529, 35618777
Central Nervous System Infections	Associate	14584882
Central Nervous System Vascular Malformations	Associate	33905594
Chronic Kidney Disease Mineral and Bone Disorder	Associate	24108692
Cranial Nerve Diseases	Associate	35370969
Epilepsy	Associate	27540713
Fractures Bone	Associate	27540713, 30759959, 35370969, 35618777
Glioma	Associate	12843258
Hematologic Diseases	Associate	35370969
Hyperlipoproteinemia Type II	Associate	25410126
Lysosomal Storage Diseases	Associate	21527911, 32851177
Muscular Dystrophy Duchenne	Associate	16234969
Nasopharyngeal Carcinoma	Associate	22496242
Neoplasms	Associate	25410126
Osteopetrosis	Associate	12929941, 14584882, 15111300, 15177004, 16234969, 16813529, 20424301, 20499337, 21527911, 24084574, 24108692, 24336069, 25410126, 27468155, 27540713 View all (16 more)
Osteopetrosis autosomal dominant type 1	Associate	27540713, 33105733, 33318240
Osteopetrosis Autosomal Recessive 1	Associate	19507210, 20424301, 39875016
Osteopetrosis Autosomal Recessive 6	Associate	25410126
Osteopetrosis mild autosomal recessive form	Associate	20424301, 28816234, 30763735, 32691986, 33905594, 34545712, 35618777
Osteoporosis	Associate	23390581
Osteoporosis pseudoglioma syndrome	Associate	27540713
Osteosclerosis	Associate	27540713
Prostatitis	Associate	35422809
Raine syndrome	Associate	16813529
Severe Acute Respiratory Syndrome	Associate	25410126
Silicosiderosis	Associate	24108692
Uveitis Anterior	Associate	32492107

CLCN7 (chloride voltage-gated channel 7)