Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
1183
Gene name Gene Name - the full gene name approved by the HGNC.
Chloride voltage-gated channel 4
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
CLCN4
Synonyms (NCBI Gene) Gene synonyms aliases
CLC4, ClC-4, ClC-4A, MRX15, MRX49, MRXSRC
Disease Acronyms (UniProt) Disease acronyms from UniProt database
MRXSRC
Chromosome Chromosome number
X
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
Xp22.2
Summary Summary of gene provided in NCBI Entrez Gene.
The CLCN family of voltage-dependent chloride channel genes comprises nine members (CLCN1-7, Ka and Kb) which demonstrate quite diverse functional characteristics while sharing significant sequence homology. Chloride channel 4 has an evolutionary conserve
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs483352716 C>T Conflicting-interpretations-of-pathogenicity Missense variant, coding sequence variant
rs587777161 G>A,C Pathogenic Missense variant, coding sequence variant
rs879255580 T>G Pathogenic Missense variant, coding sequence variant
rs879255581 T>C Pathogenic Missense variant, coding sequence variant
rs879255582 C>T Pathogenic Missense variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT894574 hsa-miR-1252 CLIP-seq
MIRT894575 hsa-miR-1260 CLIP-seq
MIRT894576 hsa-miR-1260b CLIP-seq
MIRT894577 hsa-miR-1276 CLIP-seq
MIRT894578 hsa-miR-1283 CLIP-seq
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0005247 Function Voltage-gated chloride channel activity IBA 21873635
GO:0005254 Function Chloride channel activity IDA 10564087
GO:0005515 Function Protein binding IPI 32296183
GO:0005524 Function ATP binding IEA
GO:0005765 Component Lysosomal membrane IDA 28972156
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
302910 2022 ENSG00000073464
Protein
UniProt ID P51793
Protein name H(+)/Cl(-) exchange transporter 4 (Chloride channel protein 4) (ClC-4) (Chloride transporter ClC-4)
Protein function Strongly outwardly rectifying, electrogenic H(+)/Cl(-)exchanger which mediates the exchange of chloride ions against protons (PubMed:18063579, PubMed:23647072, PubMed:25644381, PubMed:27550844, PubMed:28972156). The CLC channel family contains b
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00654 Voltage_CLC 162 565 Voltage gated chloride channel Family
PF00571 CBS 596 660 CBS domain Domain
PF00571 CBS 693 748 CBS domain Domain
Tissue specificity TISSUE SPECIFICITY: Abundant in skeletal muscle and also detectable in brain and heart.
Sequence
Sequence length 760
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  Neutrophil extracellular trap formation   Stimuli-sensing channels
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Attention deficit hyperactivity disorder Attention deficit hyperactivity disorder rs786205019
Autism Autistic behavior rs121964908, rs62643608, rs181327458, rs797046134, rs869312704, rs1555013332, rs876657679, rs1057518999, rs1057518658, rs771827120, rs1555187899, rs773080572, rs753871454, rs1684130791, rs1684180699
View all (8 more)
Cerebellar ataxia Progressive cerebellar ataxia rs28936415, rs199476133, rs540331226, rs797046006, rs863224069, rs138358708, rs1057519429, rs750959420, rs1568440440, rs1597846084, rs759460806, rs761486324, rs1240335250, rs1596489887
Cryptorchidism Cryptorchidism rs121912555, rs104894697, rs104894698, rs398122886
Unknown
Disease term Disease name Evidence References Source
Major affective disorder MAJOR AFFECTIVE DISORDER 2, MAJOR AFFECTIVE DISORDER 1, MAJOR AFFECTIVE DISORDER 4, MAJOR AFFECTIVE DISORDER 6, MAJOR AFFECTIVE DISORDER 7, MAJOR AFFECTIVE DISORDER 8, MAJOR AFFECTIVE DISORDER 9 ClinVar
Mental depression Depressive disorder ClinVar
Associations from Text Mining
Disease Name Relationship Type References
ATR X syndrome Associate 34479510
Brain Diseases Associate 29314583
Chronic Traumatic Encephalopathy Associate 29338612
Endometrial Neoplasms Associate 37671947
Epilepsies Myoclonic Associate 29314583
Epilepsy Associate 28972156
Epilepsy Absence Associate 36842888
Epilepsy Idiopathic Generalized Associate 36842888
Epileptic Encephalopathy Early Infantile 3 Associate 37271660
Intellectual Disability Associate 28972156, 34479510