Gene Gene information from NCBI Gene database.
Entrez ID 1173
Gene name Adaptor related protein complex 2 subunit mu 1
Gene symbol AP2M1
Synonyms (NCBI Gene)
AP50CLAPM1MRD60mu2
Chromosome 3
Chromosome location 3q27.1
Summary This gene encodes a subunit of the heterotetrameric coat assembly protein complex 2 (AP2), which belongs to the adaptor complexes medium subunits family. The encoded protein is required for the activity of a vacuolar ATPase, which is responsible for proto
SNPs SNP information provided by dbSNP.
1
SNP ID Visualize variation Clinical significance Consequence
rs1577059692 C>T Pathogenic Missense variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
433
miRTarBase ID miRNA Experiments Reference
MIRT003232 hsa-miR-224-5p Luciferase reporter assay 20065103
MIRT025242 hsa-miR-34a-5p Proteomics 21566225
MIRT025242 hsa-miR-34a-5p Proteomics 21566225
MIRT031416 hsa-miR-16-5p Proteomics 18668040
MIRT046490 hsa-miR-15b-5p CLASH 23622248
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
62
GO ID Ontology Definition Evidence Reference
GO:0002092 Process Positive regulation of receptor internalization IEA
GO:0005048 Function Signal sequence binding IDA 8918456, 9171339
GO:0005048 Function Signal sequence binding IEA
GO:0005515 Function Protein binding IPI 12032142, 16189514, 19419997, 20029029, 21653829, 22916011, 23676497, 24189400, 24603492, 30021884, 31515488, 31980649, 32296183, 33436498, 33961781, 34799561, 34964704, 35271311, 35384245, 37100772, 37219487, 39251607
GO:0005765 Component Lysosomal membrane TAS
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
601024 564 ENSG00000161203
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q96CW1
Protein name AP-2 complex subunit mu (AP-2 mu chain) (Adaptin-mu2) (Adaptor protein complex AP-2 subunit mu) (Adaptor-related protein complex 2 subunit mu) (Clathrin assembly protein complex 2 mu medium chain) (Clathrin coat assembly protein AP50) (Clathrin coat-assoc
Protein function Component of the adaptor protein complex 2 (AP-2) (PubMed:12694563, PubMed:12952941, PubMed:14745134, PubMed:14985334, PubMed:15473838, PubMed:31104773). Adaptor protein complexes function in protein transport via transport vesicles in different
PDB 1H6E , 6BNT , 6URI
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF01217 Clat_adaptor_s 1 137 Clathrin adaptor complex small chain Domain
PF00928 Adap_comp_sub 159 435 Adaptor complexes medium subunit family Family
Tissue specificity TISSUE SPECIFICITY: Expressed in the brain (at protein level). {ECO:0000269|PubMed:23676497}.
Sequence
Sequence length 435
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Endocytosis
Synaptic vesicle cycle
Endocrine and other factor-regulated calcium reabsorption
Huntington disease
  Nef mediated downregulation of CD28 cell surface expression
Nef Mediated CD4 Down-regulation
Retrograde neurotrophin signalling
Nef Mediated CD8 Down-regulation
Gap junction degradation
Formation of annular gap junctions
MHC class II antigen presentation
EPH-ephrin mediated repulsion of cells
Trafficking of GluR2-containing AMPA receptors
Recycling pathway of L1
WNT5A-dependent internalization of FZD4
WNT5A-dependent internalization of FZD2, FZD5 and ROR2
Cargo recognition for clathrin-mediated endocytosis
Clathrin-mediated endocytosis
VLDLR internalisation and degradation
LDL clearance
Associated diseases Disease associations from ClinVar categorized as Causal (Pathogenic/Likely Pathogenic) or Unknown.
31
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Intellectual developmental disorder 60 with seizures Likely pathogenic; Pathogenic rs1577059692 RCV000850490
Unknown Diseases with uncertain, conflicting, or no pathogenic evidence in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
AP2M1-related disorder Benign; Likely benign; Conflicting classifications of pathogenicity rs13262, rs8478, rs2231224, rs372570685, rs2231216, rs766817198, rs118022228, rs115561047 RCV003921175
RCV003980688
RCV003980689
RCV004731198
RCV003978765
RCV003901013
RCV003976593
RCV003920762
Complex neurodevelopmental disorder Uncertain significance rs774293277 RCV005361763
Neurodevelopmental disorder Uncertain significance rs2109029641 RCV001374938
See cases Uncertain significance rs761946127 RCV002252575
Associations from Text MiningDisease associations identified through Pubtator
Disease Name Relationship Type References
Colorectal Neoplasms Associate 36510452
Mast Cell Activation Disorders Associate 35610596
Squamous Cell Carcinoma of Head and Neck Associate 35610596