Gene Gene information from NCBI Gene database.
Entrez ID 114327
Gene name EF-hand domain containing 1
Gene symbol EFHC1
Synonyms (NCBI Gene)
EJM1POC9RIB72dJ304B14.2
Chromosome 6
Chromosome location 6p12.2
Summary This gene encodes an EF-hand-containing calcium binding protein. The encoded protein likely plays a role in calcium homeostasis. Mutations in this gene have been associated with susceptibility to juvenile myoclonic epilepsy and juvenile absence epilepsy.
SNPs SNP information provided by dbSNP.
23
SNP ID Visualize variation Clinical significance Consequence
rs59794069 ATATATATATAT>-,AT,ATAT,ATATAT,ATATATAT,ATATATATAT,ATATATATATATAT,ATATATATATATATAT,ATATATATATATATATAT,ATATATATATATATATATAT,ATATATATATATATATATATAT,ATATATATATATATATATATATAT,ATATATATATATATATATATATATAT,ATATATATATATATATATATATATATAT,ATATATATATATATATATATATATATATA Likely-benign, uncertain-significance, conflicting-interpretations-of-pathogenicity 3 prime UTR variant, non coding transcript variant
rs79761183 G>A,C Benign-likely-benign, risk-factor, conflicting-interpretations-of-pathogenicity Coding sequence variant, missense variant, non coding transcript variant
rs137852776 T>C Conflicting-interpretations-of-pathogenicity, risk-factor Missense variant, non coding transcript variant, coding sequence variant
rs137852777 G>A Pathogenic, risk-factor Missense variant, non coding transcript variant, coding sequence variant
rs137852778 G>A,T Risk-factor Missense variant, non coding transcript variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
459
miRTarBase ID miRNA Experiments Reference
MIRT050971 hsa-miR-17-5p CLASH 23622248
MIRT509176 hsa-miR-1277-5p HITS-CLIP 21572407
MIRT509175 hsa-miR-6758-5p HITS-CLIP 21572407
MIRT509174 hsa-miR-6856-5p HITS-CLIP 21572407
MIRT509173 hsa-miR-3163 HITS-CLIP 21572407
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
33
GO ID Ontology Definition Evidence Reference
GO:0000281 Process Mitotic cytokinesis IBA
GO:0000281 Process Mitotic cytokinesis IMP 28370826
GO:0000922 Component Spindle pole IDA 28370826
GO:0000922 Component Spindle pole IEA
GO:0005509 Function Calcium ion binding IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
608815 16406 ENSG00000096093
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q5JVL4
Protein name EF-hand domain-containing protein 1 (Myoclonin-1)
Protein function Microtubule inner protein (MIP) part of the dynein-decorated doublet microtubules (DMTs) in cilia axoneme, which is required for motile cilia beating (PubMed:36191189). Microtubule-associated protein which regulates cell division and neuronal mi
PDB 7UNG , 8J07
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF06565 DUF1126 86 190 DUF1126 PH-like domain Domain
PF06565 DUF1126 232 351 DUF1126 PH-like domain Domain
PF06565 DUF1126 409 512 DUF1126 PH-like domain Domain
Tissue specificity TISSUE SPECIFICITY: Widely expressed. Not detected in lymphocytes. {ECO:0000269|PubMed:15258581, ECO:0000269|PubMed:36191189}.
Sequence
MVSNPVHGLPFLPGTSFKDSTKTAFHRSQTLSYRNGYAIVRRPTVGIGGDRLQFNQLSQA
ELDELASKAPVLTYGQPKQAPPADFIPAHVAFDKKVLKFDAYFQEDVPMSTEEQYRIRQV
NIYYYLEDDSMSVIEPVVENSGILQGKLIKRQRLAKNDRGDHYHWKDLNRGINITIYGKT
FRVVDCDQFT
QVFLESQGIELNPPEKMALDPYTELRKQPLRKYVTPSDFDQLKQFLTFDK
QVLRFYAIWDDTDSMYGECRTYIIHYYLMDDTVEIREVHERNDGRDPFPLLMNRQRVPKV
LVENAKNFPQCVLEISDQEVLEWYTAKDFIVGKSLTILGRTFFIYDCDPFT
RRYYKEKFG
ITDLPRIDVSKREPPPVKQELPPYNGFGLVEDSAQNCFALIPKAPKKDVIKMLVNDNKVL
RYLAVLESPIPEDKDRRFVFSYFLATDMISIFEPPVRNSGIIGGKYLGRTKVVKPYSTVD
NPVYYGPSDFFIGAVIEVFGHRFIILDTDEYV
LKYMESNAAQYSPEALASIQNHVRKREA
PAPEAESKQTEKDPGVQELEALIDTIQKQLKDHSCKDNIREAFQIYDKEASGYVDRDMFF
KICESLNVPVDDSLVKELIRMCSHGEGKINYYNFVRAFSN
Sequence length 640
Interactions View interactions
Associated diseases Disease associations from ClinVar categorized as Causal (Pathogenic/Likely Pathogenic) or Unknown.
755
Unknown Diseases with uncertain, conflicting, or no pathogenic evidence in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Absence seizure Uncertain significance; Conflicting classifications of pathogenicity; Likely benign; Benign; risk factor rs201520866, rs1764251712, rs1764252445, rs759050400, rs1481620865, rs571448222, rs144739917, rs535905126, rs771316611, rs73740379, rs1303813611, rs1286302392, rs145102896, rs995402027, rs1430629936
View all (251 more)
RCV002499599
RCV003770649
RCV003770678
RCV003770774
RCV003770706
RCV003770688
RCV003770789
RCV003770653
RCV003770787
RCV003764768
RCV001335886
RCV003770872
RCV003771001
RCV003770888
RCV003770898
RCV003770969
RCV003770883
RCV003771011
RCV003770963
RCV003771007
RCV003770953
RCV003771026
RCV002488101
RCV003771079
RCV003771193
RCV005208736
RCV003771197
RCV003771071
RCV003771158
RCV003771058
RCV003771096
RCV003771107
RCV003771050
RCV003771124
RCV003771286
RCV003771330
RCV003771303
RCV003771316
RCV003771288
RCV003771319
RCV003771310
RCV003771284
RCV003771318
RCV003771364
RCV003771414
RCV003771343
RCV003771405
RCV003771384
RCV003771400
RCV003771388
RCV003771373
RCV003771342
RCV003771468
RCV003771434
RCV003771440
RCV003771426
RCV003771474
RCV003771457
RCV003771463
RCV003771487
RCV003771516
RCV003771520
RCV003771514
RCV003771535
RCV003771528
RCV003771533
RCV003771532
RCV003771569
RCV003771561
RCV003764812
RCV003764813
RCV003764814
RCV000515423
RCV003764816
RCV003764817
RCV003764818
RCV003764819
RCV003764820
RCV003764821
RCV003764822
RCV003764823
RCV003772800
RCV003772853
RCV003772916
RCV003764855
RCV003764856
RCV003764857
RCV003764858
RCV003764859
RCV002498599
RCV003773158
RCV003773170
RCV003773250
RCV003774048
RCV003764515
RCV001838977
RCV005208698
RCV002503740
RCV000002149
RCV000002150
RCV003777556
RCV003765084
RCV003765095
RCV003765101
RCV003765104
RCV003765189
RCV003765178
RCV001589056
RCV003765180
RCV000472645
RCV003765190
RCV003765169
RCV003765167
RCV003765170
RCV003765171
RCV003765173
RCV003765174
RCV003765175
RCV003765176
RCV000764651
RCV001836748
RCV003765182
RCV000226361
RCV003765185
RCV003765184
RCV003765186
RCV003765187
RCV003765168
RCV003765188
RCV000764652
RCV003777009
RCV003765218
RCV003765615
RCV003765636
RCV003765644
RCV003765650
RCV003766056
RCV003766055
RCV003766057
RCV003766058
RCV003147458
RCV003766199
RCV003766198
RCV003765172
RCV003766473
RCV003766606
RCV003766605
RCV002481468
RCV003766609
RCV003766604
RCV003766610
RCV003766651
RCV003766607
RCV003766608
RCV005208923
RCV003767006
RCV003767002
RCV003767001
RCV003767003
RCV003767004
RCV003767005
RCV003767856
RCV003767858
RCV003767857
RCV003767860
RCV003767859
RCV003767855
RCV003767854
RCV003767853
RCV000703872
RCV003768084
RCV003768070
RCV003768078
RCV002493238
RCV003768082
RCV003768052
RCV003768053
RCV003768074
RCV003768057
RCV003768063
RCV003768059
RCV000694200
RCV003768088
RCV003768068
RCV003768504
RCV003768498
RCV003768537
RCV003768516
RCV003768486
RCV003768543
RCV003768524
RCV000800502
RCV003768532
RCV003768488
RCV003768517
RCV003768539
RCV003768545
RCV003768534
RCV003768487
RCV003768495
RCV003768514
RCV003768531
RCV003768506
RCV003768501
RCV003768654
RCV003768665
RCV003768652
RCV003768671
RCV003769265
RCV005208772
RCV003768767
RCV005208777
RCV005208881
RCV005208793
RCV003768914
RCV005208813
RCV003768931
RCV003768933
RCV003768934
RCV003768932
RCV003768953
RCV003768970
RCV003768939
RCV003768948
RCV003768966
RCV003768965
RCV003768981
RCV003768956
RCV003768942
RCV003768935
RCV003768955
RCV003768946
RCV003768945
RCV001329046
RCV003768982
RCV003768967
RCV003768940
RCV003768984
RCV003768968
RCV003768973
RCV002489637
RCV002481992
RCV003768944
RCV003768976
RCV003768962
RCV003768949
RCV003770252
RCV003770259
RCV003770244
RCV003770243
RCV003770238
RCV003770236
RCV003770250
RCV003770248
RCV003770251
RCV003770265
RCV003770263
RCV003770264
RCV003770266
RCV003770267
RCV003770285
RCV003770279
RCV003770282
RCV003770281
RCV003770584
RCV003770480
RCV003770592
RCV003770540
RCV003770573
RCV003770561
RCV003770511
RCV003770486
RCV003770600
RCV003770609
EFHC1-related disorder Conflicting classifications of pathogenicity; Benign; Likely benign; Uncertain significance rs73740379, rs149315015, rs149055334, rs145194882, rs3804506, rs139197513, rs145754721, rs377732929, rs142458862, rs115475262, rs886061629, rs2532626998, rs79761183 RCV003915095
RCV003935113
RCV003891754
RCV003955018
RCV003927641
RCV003947569
RCV003907654
RCV003977495
RCV003927737
RCV003910000
RCV004758005
RCV003929837
RCV003891753
Epilepsy, idiopathic generalized, susceptibility to, 7 Conflicting classifications of pathogenicity rs140476054 RCV001808465
Epilepsy, juvenile absence, susceptibility to, 1 Conflicting classifications of pathogenicity; Uncertain significance rs371151471, rs780571007 RCV003224206
RCV005394665
Associations from Text MiningDisease associations identified through Pubtator
Disease Name Relationship Type References
Drug Resistant Epilepsy Associate 22690745
Epilepsy Associate 22690745, 28074849, 31056551
Epilepsy Idiopathic Generalized Associate 12830434, 36842888, 8352275
Myoclonic Epilepsy Juvenile Associate 12830434, 16414227, 17634063, 18823326, 22690745, 22727576, 25489633, 33969125, 36842888, 38088014, 8352275