Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
112817
Gene name Gene Name - the full gene name approved by the HGNC.
4-hydroxy-2-oxoglutarate aldolase 1
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
HOGA1
Synonyms (NCBI Gene) Gene synonyms aliases
C10orf65, DHDPS2, DHDPSL, HP3, NPL2
Disease Acronyms (UniProt) Disease acronyms from UniProt database
HP3
Chromosome Chromosome number
10
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
10q24.2
Summary Summary of gene provided in NCBI Entrez Gene.
The authors of PMID:20797690 cloned this gene while searching for genes in a region of chromosome 10 linked to primary hyperoxalurea type III. They noted that even though the encoded protein has been described as a mitochondrial dihydrodipicolinate syntha
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs138207257 G>A,T Pathogenic, pathogenic-likely-pathogenic Missense variant, coding sequence variant
rs149150736 C>T Pathogenic Coding sequence variant, missense variant
rs185803104 G>T Pathogenic Intron variant
rs200529020 G>A Likely-pathogenic Coding sequence variant, missense variant, intron variant
rs201803986 C>A,T Likely-pathogenic Coding sequence variant, missense variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT049270 hsa-miR-92a-3p CLASH 23622248
MIRT1052484 hsa-miR-1827 CLIP-seq
MIRT1052485 hsa-miR-3929 CLIP-seq
MIRT1052486 hsa-miR-4419b CLIP-seq
MIRT1052487 hsa-miR-4459 CLIP-seq
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0005515 Function Protein binding IPI 27499296, 32296183
GO:0005739 Component Mitochondrion ISS 21998747
GO:0005759 Component Mitochondrial matrix TAS
GO:0008700 Function 4-hydroxy-2-oxoglutarate aldolase activity IDA 21998747
GO:0008700 Function 4-hydroxy-2-oxoglutarate aldolase activity ISS
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
613597 25155 ENSG00000241935
Protein
UniProt ID Q86XE5
Protein name 4-hydroxy-2-oxoglutarate aldolase, mitochondrial (EC 4.1.3.16) (Dihydrodipicolinate synthase-like) (DHDPS-like protein) (Probable 2-keto-4-hydroxyglutarate aldolase) (Probable KHG-aldolase) (Protein 569272)
Protein function Catalyzes the final step in the metabolic pathway of hydroxyproline.
PDB 3S5N , 3S5O
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00701 DHDPS 34 323 Dihydrodipicolinate synthetase family Domain
Sequence
Sequence length 327
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  Arginine and proline metabolism
Glyoxylate and dicarboxylate metabolism
Metabolic pathways
  Glyoxylate metabolism and glycine degradation
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Cholestasis Cholestasis rs121909103, rs751511532, rs376368459, rs762702807, rs1578490102, rs1578499691, rs1578504946, rs1317656688, rs199791850, rs1452792080, rs1578491039 27989131
Hyperoxaluria Hyperoxaluria, Primary Hyperoxaluria, Primary hyperoxaluria type III, Primary hyperoxaluria type 3 rs397509360, rs138207257, rs2041105506, rs267606763, rs267606764, rs80356708, rs119490108, rs121908520, rs121908521, rs121908522, rs121908523, rs121908524, rs121908525, rs121908526, rs121908527
View all (238 more)
25629080, 20797690, 25644115, 24563386, 27096395, 22771891, 22851625, 22781098, 21896830, 27604308, 25972204, 28711958, 22391140, 21998747
Nephronophthisis NEPHROLITHIASIS, CALCIUM OXALATE rs62635288, rs267607116, rs201893408, rs267607117, rs202149403, rs118204032, rs121918244, rs750962965, rs1474058708, rs119456959, rs119456960, rs119456961, rs119456962, rs267606916, rs137852856
View all (190 more)
Associations from Text Mining
Disease Name Relationship Type References
Genetic Diseases Inborn Associate 22232173
Hyperoxaluria Associate 21896830, 25972204
Hyperoxaluria Primary Associate 20797690, 25644115, 35612621, 35661454, 36151119, 39933499, 40225159
Kidney Calculi Associate 22232173, 35612621
Kidney Diseases Associate 27561601
Neoplasms Associate 36434634
Nephrocalcinosis Associate 35612621
Nephrolithiasis Calcium Oxalate Associate 21896830
Philadelphia Chromosome Associate 27561601, 33274618, 36151119
Primary hyperoxaluria type 1 Associate 25972204, 27096395, 27561601, 31401635, 34245816