Gene Details | GeDiPNet - Complete Gene Info, Disease Associations & Pathways

Gene Gene miRNA Gene ontology Other IDs Protein Pathways Associated diseases
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.	11117
Gene name Gene Name - the full gene name approved by the HGNC.	Elastin microfibril interfacer 1
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.	EMILIN1
Synonyms (NCBI Gene) Gene synonyms aliases	ATBFS, EMI, EMILIN, HMN10, HMND10, gp115
Disease Acronyms (UniProt) Disease acronyms from UniProt database	ATBFS, HMND10
Chromosome Chromosome number	2
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.	2p23.3
Summary Summary of gene provided in NCBI Entrez Gene.	This gene encodes an extracellular matrix glycoprotein that is characterized by an N-terminal microfibril interface domain, a coiled-coiled alpha-helical domain, a collagenous domain and a C-terminal globular C1q domain. The encoded protein associates wit

Show/Hide all(19)

miRTarBase ID	miRNA	Experiments
MIRT962003	hsa-miR-1915	CLIP-seq
MIRT962004	hsa-miR-3960	CLIP-seq
MIRT962005	hsa-miR-4466	CLIP-seq
MIRT962006	hsa-miR-4685-5p	CLIP-seq
MIRT962007	hsa-miR-675	CLIP-seq
MIRT1985055	hsa-miR-1236	CLIP-seq
MIRT1985056	hsa-miR-1277	CLIP-seq
MIRT962003	hsa-miR-1915	CLIP-seq
MIRT1985057	hsa-miR-3157-5p	CLIP-seq
MIRT1985055	hsa-miR-1236	CLIP-seq
MIRT1985056	hsa-miR-1277	CLIP-seq
MIRT1985057	hsa-miR-3157-5p	CLIP-seq
MIRT2219869	hsa-miR-4632	CLIP-seq
MIRT2219870	hsa-miR-4707-3p	CLIP-seq
MIRT2219871	hsa-miR-626	CLIP-seq
MIRT2219872	hsa-miR-665	CLIP-seq
MIRT1985055	hsa-miR-1236	CLIP-seq
MIRT1985056	hsa-miR-1277	CLIP-seq
MIRT1985057	hsa-miR-3157-5p	CLIP-seq

Show/Hide all(33)

GO ID	Ontology	Definition	Evidence	Reference
GO:0003180	Process	Aortic valve morphogenesis	ISS
GO:0005201	Function	Extracellular matrix structural constituent	RCA	25037231
GO:0005515	Function	Protein binding	IPI	11278945, 16189514, 19447967, 21516116, 25416956, 26627825, 29892012, 31515488
GO:0005576	Component	Extracellular region	TAS
GO:0005581	Component	Collagen trimer	IEA
GO:0005615	Component	Extracellular space	IMP	26462740
GO:0007155	Process	Cell adhesion	TAS	10358019
GO:0007160	Process	Cell-matrix adhesion	IMP	18463100
GO:0010628	Process	Positive regulation of gene expression	ISS
GO:0010629	Process	Negative regulation of gene expression	ISS
GO:0010811	Process	Positive regulation of cell-substrate adhesion	IEA
GO:0016477	Process	Cell migration	IMP	18463100
GO:0016525	Process	Negative regulation of angiogenesis	ISS
GO:0030023	Function	Extracellular matrix constituent conferring elasticity	IBA	21873635
GO:0030023	Function	Extracellular matrix constituent conferring elasticity	RCA	20551380, 23979707, 25037231, 27068509, 28327460, 28675934
GO:0030512	Process	Negative regulation of transforming growth factor beta receptor signaling pathway	ISS
GO:0030948	Process	Negative regulation of vascular endothelial growth factor receptor signaling pathway	ISS
GO:0032966	Process	Negative regulation of collagen biosynthetic process	ISS
GO:0034668	Component	Integrin alpha4-beta1 complex	IMP	18463100
GO:0042802	Function	Identical protein binding	IPI	10821830, 18463100, 25416956
GO:0048251	Process	Elastic fiber assembly	ISS
GO:0050866	Process	Negative regulation of cell activation	ISS
GO:0060394	Process	Negative regulation of pathway-restricted SMAD protein phosphorylation	ISS
GO:0062023	Component	Collagen-containing extracellular matrix	HDA	23658023, 23979707, 25037231, 27068509, 28327460, 28675934
GO:0062023	Component	Collagen-containing extracellular matrix	HDA	20551380
GO:0062023	Component	Collagen-containing extracellular matrix	IMP	26462740
GO:0070062	Component	Extracellular exosome	HDA	21362503
GO:0070373	Process	Negative regulation of ERK1 and ERK2 cascade	ISS
GO:0098640	Function	Integrin binding involved in cell-matrix adhesion	IMP	18463100
GO:1901203	Process	Positive regulation of extracellular matrix assembly	ISS
GO:1904027	Process	Negative regulation of collagen fibril organization	ISS
GO:1905522	Process	Negative regulation of macrophage migration	ISS
GO:1990971	Component	EMILIN complex	IMP	18463100

MIM	HGNC	e!Ensembl
130660	19880	ENSG00000138080

Protein

UniProt ID

Q9Y6C2

Protein name

EMILIN-1 (Elastin microfibril interface-located protein 1) (Elastin microfibril interfacer 1)

Protein function

Involved in elastic and collagen fibers formation. It is required for EFEMP2 deposition into the extracellular matrix, and collagen network assembly and cross-linking via protein-lysine 6-oxidase/LOX activity (PubMed:36351433). May be responsibl

PDB

2KA3 , 2OII

Family and domains

Pfam

Accession	ID	Position in sequence	Description	Type
PF07546	EMI	57 → 126	EMI domain	Domain
PF01391	Collagen	812 → 870	Collagen triple helix repeat (20 copies)	Repeat
PF00386	C1q	872 → 1007	C1q domain	Domain

Tissue specificity

TISSUE SPECIFICITY: Distributed in tissues where resilience and elastic recoil are prominent. Highest levels in the adult small intestine, aorta, lung, uterus, and appendix and in the fetal spleen, kidney, lung, and heart; intermediate expression was dete

Sequence

MAPRTLWSCYLCCLLTAAAGAASYPPRGFSLYTGSSGALSPGGPQAQIAPRPASRHRNWC
AYVVTRTVSCVLEDGVETYVKYQPCAWGQPQCPQSIMYRRFLRPRYRVAYKTVTDMEWRC
CQGYGGDDCAESPAPALGPASSTPRPLARPARPNLSGSSAGSPLSGLGGEGPGESEKVQQ
LEEQVQSLTKELQGLRGVLQGLSGRLAEDVQRAVETAFNGRQQPADAAARPGVHETLNEI
QHQLQLLDTRVSTHDQELGHLNNHHGGSSSSGGSRAPAPASAPPGPSEELLRQLEQRLQE
SCSVCLAGLDGFRRQQQEDRERLRAMEKLLASVEERQRHLAGLAVGRRPPQECCSPELGR
RLAELERRLDVVAGSVTVLSGRRGTELGGAAGQGGHPPGYTSLASRLSRLEDRFNSTLGP
SEEQEESWPGAPGGLSHWLPAARGRLEQLGGLLANVSGELGGRLDLLEEQVAGAMQACGQ
LCSGAPGEQDSQVSEILSALERRVLDSEGQLRLVGSGLHTVEAAGEARQATLEGLQEVVG
RLQDRVDAQDETAAEFTLRLNLTAARLGQLEGLLQAHGDEGCGACGGVQEELGRLRDGVE
RCSCPLLPPRGPGAGPGVGGPSRGPLDGFSVFGGSSGSALQALQGELSEVILSFSSLNDS
LNELQTTVEGQGADLADLGATKDRIISEINRLQQEATEHATESEERFRGLEEGQAQAGQC
PSLEGRLGRLEGVCERLDTVAGGLQGLREGLSRHVAGLWAGLRETNTTSQMQAALLEKLV
GGQAGLGRRLGALNSSLQLLEDRLHQLSLKDLTGPAGEAGPPGPPGLQGPPGPAGPPGSP
GKDGQEGPIGPPGPQGEQGVEGAPAAPVPQVAFSAALSLPRSEPGTVPFDRVLLNDGGYY
DPETGVFTAPLAGRYLLSAVLTGHRHEKVEAVLSRSNQGVARVDSGGYEPEGLENKPVAE
SQPSPGTLGVFSLILPLQAGDTVCVDLVMGQLAHSEEPLTIFSGALLYGDPELEHA

Sequence length

1016

Interactions

View interactions

	Reactome
			Molecules associated with elastic fibres

Show/Hide Causal Diseases (2)

Disease term	Disease name	dbSNP ID
Causal
Connective tissue disease	EMILIN-1-related connective tissue disease	rs5742905, rs80338688, rs80356506, rs104894800, rs104894948, rs28931614, rs121913482, rs28933068, rs121913483, rs137854464, rs121912870, rs387906980, rs587777352, rs527236145, rs189754995 View all (12 more)
Thoracic aortic aneurysm and aortic dissection	Familial thoracic aortic aneurysm and aortic dissection	rs121964962, rs121964964, rs5742905, rs121964969, rs28934891, rs375846341, rs121964972, rs121964973, rs587776600, rs121908172, rs121908173, rs121918714, rs104893809, rs104893815, rs104893810 View all (614 more)

Show/Hide Text Mining Associations (16)

Disease Name	Relationship Type	References
Associations from Text Mining
Aortic Aneurysm	Associate	40222083
Aortic Aneurysm Thoracic	Associate	29158612
Arterial Tortuosity Syndrome	Associate	40222083
Brain Neoplasms	Associate	30737471
Breast Neoplasms	Inhibit	27581738
Breast Neoplasms	Associate	39958347
Carcinoma Ductal Breast	Associate	27581738
Carcinoma Renal Cell	Associate	19922630
Carcinosarcoma	Associate	28088687
Cardiovascular Diseases	Associate	40222083
Essential Hypertension	Associate	19922630
Hypertension	Associate	19922630
Hypoxia	Associate	27581738
Neoplasms	Associate	26226845, 27581738, 28088687, 29207374, 30544909
Neoplasms	Inhibit	31242895
Stomach Neoplasms	Associate	31242895

EMILIN1 (elastin microfibril interfacer 1)