Gene Details | GeDiPNet - Complete Gene Info, Disease Associations & Pathways

Gene Gene information from NCBI Gene database. Gene SNPs miRNA Gene ontology Other IDs Protein Pathways Associated diseases
Entrez ID	1105
Gene name	Chromodomain helicase DNA binding protein 1
Gene symbol	CHD1
Synonyms (NCBI Gene)	CHD-1PILBOS
Chromosome	5
Chromosome location	5q15-q21.1
Summary	The CHD family of proteins is characterized by the presence of chromo (chromatin organization modifier) domains and SNF2-related helicase/ATPase domains. CHD genes alter gene expression possibly by modification of chromatin structure thus altering access

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SNP ID	Visualize variation	Clinical significance	Consequence
rs1064795875	T>C,G	Uncertain-significance, pathogenic	Genic upstream transcript variant, missense variant, coding sequence variant, synonymous variant, non coding transcript variant
rs1293161341	C>T	Pathogenic	Missense variant, coding sequence variant, non coding transcript variant, 3 prime UTR variant
rs1554078349	C>T	Pathogenic, not-provided	Coding sequence variant, non coding transcript variant, missense variant, genic upstream transcript variant
rs1554078856	C>T	Pathogenic	Coding sequence variant, non coding transcript variant, missense variant, genic upstream transcript variant

431

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miRTarBase ID	miRNA	Experiments	Reference
MIRT005127	hsa-miR-30a-5p	pSILAC	18668040
MIRT023406	hsa-miR-30b-5p	Sequencing	20371350
MIRT027799	hsa-miR-98-5p	Microarray	19088304
MIRT005127	hsa-miR-30a-5p	Proteomics;Other	18668040
MIRT032461	hsa-let-7b-5p	Proteomics	18668040
MIRT051818	hsa-let-7c-5p	CLASH	23622248
MIRT047842	hsa-miR-30c-5p	CLASH	23622248
MIRT038317	hsa-miR-130b-5p	CLASH	23622248
MIRT052903	hsa-miR-26a-5p	Luciferase reporter assayWestern blot	24735615
MIRT052903	hsa-miR-26a-5p	Luciferase reporter assayWestern blot	24735615
MIRT624364	hsa-miR-362-5p	HITS-CLIP	23824327
MIRT624363	hsa-miR-500b-5p	HITS-CLIP	23824327
MIRT624362	hsa-miR-4700-3p	HITS-CLIP	23824327
MIRT624361	hsa-miR-501-5p	HITS-CLIP	23824327
MIRT624364	hsa-miR-362-5p	HITS-CLIP	23824327
MIRT624363	hsa-miR-500b-5p	HITS-CLIP	23824327
MIRT624361	hsa-miR-501-5p	HITS-CLIP	23824327
MIRT624364	hsa-miR-362-5p	HITS-CLIP	23824327
MIRT624363	hsa-miR-500b-5p	HITS-CLIP	23824327
MIRT624361	hsa-miR-501-5p	HITS-CLIP	23824327
MIRT624364	hsa-miR-362-5p	HITS-CLIP	23824327
MIRT624363	hsa-miR-500b-5p	HITS-CLIP	23824327
MIRT624362	hsa-miR-4700-3p	HITS-CLIP	23824327
MIRT624361	hsa-miR-501-5p	HITS-CLIP	23824327
MIRT624364	hsa-miR-362-5p	HITS-CLIP	23824327
MIRT624363	hsa-miR-500b-5p	HITS-CLIP	23824327
MIRT624362	hsa-miR-4700-3p	HITS-CLIP	23824327
MIRT624361	hsa-miR-501-5p	HITS-CLIP	23824327
MIRT624364	hsa-miR-362-5p	HITS-CLIP	23824327
MIRT624363	hsa-miR-500b-5p	HITS-CLIP	23824327
MIRT624362	hsa-miR-4700-3p	HITS-CLIP	23824327
MIRT624361	hsa-miR-501-5p	HITS-CLIP	23824327
MIRT548840	hsa-miR-548n	PAR-CLIP	20371350
MIRT548839	hsa-miR-548av-5p	PAR-CLIP	20371350
MIRT548838	hsa-miR-548k	PAR-CLIP	20371350
MIRT548837	hsa-miR-8054	PAR-CLIP	20371350
MIRT548836	hsa-miR-7849-3p	PAR-CLIP	20371350
MIRT548835	hsa-miR-3613-3p	PAR-CLIP	20371350
MIRT548834	hsa-miR-570-3p	PAR-CLIP	20371350
MIRT548840	hsa-miR-548n	PAR-CLIP	20371350
MIRT548839	hsa-miR-548av-5p	PAR-CLIP	20371350
MIRT548838	hsa-miR-548k	PAR-CLIP	20371350
MIRT548837	hsa-miR-8054	PAR-CLIP	20371350
MIRT548836	hsa-miR-7849-3p	PAR-CLIP	20371350
MIRT548835	hsa-miR-3613-3p	PAR-CLIP	20371350
MIRT548834	hsa-miR-570-3p	PAR-CLIP	20371350
MIRT548840	hsa-miR-548n	PAR-CLIP	21572407
MIRT548839	hsa-miR-548av-5p	PAR-CLIP	21572407
MIRT548838	hsa-miR-548k	PAR-CLIP	21572407
MIRT548837	hsa-miR-8054	PAR-CLIP	21572407
MIRT548836	hsa-miR-7849-3p	PAR-CLIP	21572407
MIRT548835	hsa-miR-3613-3p	PAR-CLIP	21572407
MIRT548834	hsa-miR-570-3p	PAR-CLIP	21572407
MIRT497841	hsa-miR-4691-3p	PAR-CLIP	22291592
MIRT497840	hsa-miR-3194-5p	PAR-CLIP	22291592
MIRT497839	hsa-miR-6792-5p	PAR-CLIP	22291592
MIRT497838	hsa-miR-4503	PAR-CLIP	22291592
MIRT005127	hsa-miR-30a-5p	HITS-CLIP	22473208
MIRT023406	hsa-miR-30b-5p	HITS-CLIP	22473208
MIRT047842	hsa-miR-30c-5p	HITS-CLIP	22473208
MIRT728002	hsa-miR-30d-5p	HITS-CLIP	22473208
MIRT728001	hsa-miR-30e-5p	HITS-CLIP	22473208
MIRT624364	hsa-miR-362-5p	HITS-CLIP	23824327
MIRT624363	hsa-miR-500b-5p	HITS-CLIP	23824327
MIRT624362	hsa-miR-4700-3p	HITS-CLIP	23824327
MIRT624361	hsa-miR-501-5p	HITS-CLIP	23824327
MIRT624364	hsa-miR-362-5p	HITS-CLIP	23824327
MIRT624363	hsa-miR-500b-5p	HITS-CLIP	23824327
MIRT624361	hsa-miR-501-5p	HITS-CLIP	23824327
MIRT624364	hsa-miR-362-5p	HITS-CLIP	23824327
MIRT624363	hsa-miR-500b-5p	HITS-CLIP	23824327
MIRT624361	hsa-miR-501-5p	HITS-CLIP	23824327
MIRT624364	hsa-miR-362-5p	HITS-CLIP	23824327
MIRT624363	hsa-miR-500b-5p	HITS-CLIP	23824327
MIRT624362	hsa-miR-4700-3p	HITS-CLIP	23824327
MIRT624361	hsa-miR-501-5p	HITS-CLIP	23824327
MIRT624364	hsa-miR-362-5p	HITS-CLIP	23824327
MIRT624363	hsa-miR-500b-5p	HITS-CLIP	23824327
MIRT624362	hsa-miR-4700-3p	HITS-CLIP	23824327
MIRT624361	hsa-miR-501-5p	HITS-CLIP	23824327
MIRT624364	hsa-miR-362-5p	HITS-CLIP	23824327
MIRT624363	hsa-miR-500b-5p	HITS-CLIP	23824327
MIRT624362	hsa-miR-4700-3p	HITS-CLIP	23824327
MIRT624361	hsa-miR-501-5p	HITS-CLIP	23824327
MIRT548840	hsa-miR-548n	PAR-CLIP	20371350
MIRT548839	hsa-miR-548av-5p	PAR-CLIP	20371350
MIRT548838	hsa-miR-548k	PAR-CLIP	20371350
MIRT548837	hsa-miR-8054	PAR-CLIP	20371350
MIRT548836	hsa-miR-7849-3p	PAR-CLIP	20371350
MIRT548835	hsa-miR-3613-3p	PAR-CLIP	20371350
MIRT548834	hsa-miR-570-3p	PAR-CLIP	20371350
MIRT548840	hsa-miR-548n	PAR-CLIP	20371350
MIRT548839	hsa-miR-548av-5p	PAR-CLIP	20371350
MIRT548838	hsa-miR-548k	PAR-CLIP	20371350
MIRT548837	hsa-miR-8054	PAR-CLIP	20371350
MIRT548836	hsa-miR-7849-3p	PAR-CLIP	20371350
MIRT548835	hsa-miR-3613-3p	PAR-CLIP	20371350
MIRT548834	hsa-miR-570-3p	PAR-CLIP	20371350
MIRT548840	hsa-miR-548n	PAR-CLIP	21572407
MIRT548839	hsa-miR-548av-5p	PAR-CLIP	21572407
MIRT548838	hsa-miR-548k	PAR-CLIP	21572407
MIRT548837	hsa-miR-8054	PAR-CLIP	21572407
MIRT548836	hsa-miR-7849-3p	PAR-CLIP	21572407
MIRT548835	hsa-miR-3613-3p	PAR-CLIP	21572407
MIRT548834	hsa-miR-570-3p	PAR-CLIP	21572407
MIRT497841	hsa-miR-4691-3p	PAR-CLIP	22291592
MIRT497840	hsa-miR-3194-5p	PAR-CLIP	22291592
MIRT497839	hsa-miR-6792-5p	PAR-CLIP	22291592
MIRT497838	hsa-miR-4503	PAR-CLIP	22291592
MIRT888789	hsa-miR-103a	CLIP-seq
MIRT888790	hsa-miR-107	CLIP-seq
MIRT888791	hsa-miR-1200	CLIP-seq
MIRT888792	hsa-miR-1236	CLIP-seq
MIRT888793	hsa-miR-124	CLIP-seq
MIRT888794	hsa-miR-1267	CLIP-seq
MIRT888795	hsa-miR-1297	CLIP-seq
MIRT888796	hsa-miR-132	CLIP-seq
MIRT888797	hsa-miR-135a	CLIP-seq
MIRT888798	hsa-miR-135b	CLIP-seq
MIRT888799	hsa-miR-137	CLIP-seq
MIRT888800	hsa-miR-148a	CLIP-seq
MIRT888801	hsa-miR-148b	CLIP-seq
MIRT888802	hsa-miR-152	CLIP-seq
MIRT888803	hsa-miR-194	CLIP-seq
MIRT888804	hsa-miR-2054	CLIP-seq
MIRT888805	hsa-miR-212	CLIP-seq
MIRT888806	hsa-miR-219-1-3p	CLIP-seq
MIRT888807	hsa-miR-2355-5p	CLIP-seq
MIRT888808	hsa-miR-26a	CLIP-seq
MIRT888809	hsa-miR-26b	CLIP-seq
MIRT888810	hsa-miR-299-5p	CLIP-seq
MIRT888811	hsa-miR-300	CLIP-seq
MIRT888812	hsa-miR-30a	CLIP-seq
MIRT888813	hsa-miR-30b	CLIP-seq
MIRT888814	hsa-miR-30c	CLIP-seq
MIRT888815	hsa-miR-30d	CLIP-seq
MIRT888816	hsa-miR-30e	CLIP-seq
MIRT888817	hsa-miR-3140-5p	CLIP-seq
MIRT888818	hsa-miR-3147	CLIP-seq
MIRT888819	hsa-miR-3153	CLIP-seq
MIRT888820	hsa-miR-3163	CLIP-seq
MIRT888821	hsa-miR-3177-5p	CLIP-seq
MIRT888822	hsa-miR-3182	CLIP-seq
MIRT888823	hsa-miR-323-5p	CLIP-seq
MIRT888824	hsa-miR-338-5p	CLIP-seq
MIRT888825	hsa-miR-339-5p	CLIP-seq
MIRT888826	hsa-miR-33a	CLIP-seq
MIRT888827	hsa-miR-33b	CLIP-seq
MIRT888828	hsa-miR-34a	CLIP-seq
MIRT888829	hsa-miR-34b	CLIP-seq
MIRT888830	hsa-miR-34c-5p	CLIP-seq
MIRT888831	hsa-miR-3616-3p	CLIP-seq
MIRT888832	hsa-miR-3646	CLIP-seq
MIRT888833	hsa-miR-3653	CLIP-seq
MIRT888834	hsa-miR-3659	CLIP-seq
MIRT888835	hsa-miR-3667-3p	CLIP-seq
MIRT888836	hsa-miR-3674	CLIP-seq
MIRT888837	hsa-miR-3677-5p	CLIP-seq
MIRT888838	hsa-miR-3679-3p	CLIP-seq
MIRT888839	hsa-miR-3689a-3p	CLIP-seq
MIRT888840	hsa-miR-3689c	CLIP-seq
MIRT888841	hsa-miR-3689d	CLIP-seq
MIRT888842	hsa-miR-3714	CLIP-seq
MIRT888843	hsa-miR-381	CLIP-seq
MIRT888844	hsa-miR-3910	CLIP-seq
MIRT888845	hsa-miR-3944-5p	CLIP-seq
MIRT888846	hsa-miR-3978	CLIP-seq
MIRT888847	hsa-miR-410	CLIP-seq
MIRT888848	hsa-miR-4272	CLIP-seq
MIRT888849	hsa-miR-4275	CLIP-seq
MIRT888850	hsa-miR-4302	CLIP-seq
MIRT888851	hsa-miR-4318	CLIP-seq
MIRT888852	hsa-miR-4328	CLIP-seq
MIRT888853	hsa-miR-4420	CLIP-seq
MIRT888854	hsa-miR-4425	CLIP-seq
MIRT888855	hsa-miR-4436b-3p	CLIP-seq
MIRT888856	hsa-miR-4465	CLIP-seq
MIRT888857	hsa-miR-4477a	CLIP-seq
MIRT888858	hsa-miR-4493	CLIP-seq
MIRT888859	hsa-miR-4495	CLIP-seq
MIRT888860	hsa-miR-449a	CLIP-seq
MIRT888861	hsa-miR-449b	CLIP-seq
MIRT888862	hsa-miR-450b-3p	CLIP-seq
MIRT888863	hsa-miR-4652-3p	CLIP-seq
MIRT888864	hsa-miR-4658	CLIP-seq
MIRT888865	hsa-miR-4666-3p	CLIP-seq
MIRT888866	hsa-miR-4668-3p	CLIP-seq
MIRT888867	hsa-miR-4668-5p	CLIP-seq
MIRT888868	hsa-miR-4681	CLIP-seq
MIRT888869	hsa-miR-4682	CLIP-seq
MIRT888870	hsa-miR-4693-5p	CLIP-seq
MIRT888871	hsa-miR-4694-3p	CLIP-seq
MIRT888872	hsa-miR-4699-3p	CLIP-seq
MIRT888873	hsa-miR-4728-5p	CLIP-seq
MIRT888874	hsa-miR-4753-3p	CLIP-seq
MIRT888875	hsa-miR-4758-5p	CLIP-seq
MIRT888876	hsa-miR-4759	CLIP-seq
MIRT888877	hsa-miR-4761-5p	CLIP-seq
MIRT888878	hsa-miR-4768-5p	CLIP-seq
MIRT888879	hsa-miR-4775	CLIP-seq
MIRT888880	hsa-miR-4802-5p	CLIP-seq
MIRT888881	hsa-miR-489	CLIP-seq
MIRT888882	hsa-miR-494	CLIP-seq
MIRT888883	hsa-miR-495	CLIP-seq
MIRT888884	hsa-miR-498	CLIP-seq
MIRT888885	hsa-miR-500a	CLIP-seq
MIRT888886	hsa-miR-506	CLIP-seq
MIRT888887	hsa-miR-513a-5p	CLIP-seq
MIRT888888	hsa-miR-514	CLIP-seq
MIRT888889	hsa-miR-514b-3p	CLIP-seq
MIRT888890	hsa-miR-522	CLIP-seq
MIRT888891	hsa-miR-548ac	CLIP-seq
MIRT888892	hsa-miR-548ad	CLIP-seq
MIRT888893	hsa-miR-548ae	CLIP-seq
MIRT888894	hsa-miR-548aj	CLIP-seq
MIRT888895	hsa-miR-548am	CLIP-seq
MIRT888896	hsa-miR-548d-3p	CLIP-seq
MIRT888897	hsa-miR-548t	CLIP-seq
MIRT888898	hsa-miR-548x	CLIP-seq
MIRT888899	hsa-miR-548z	CLIP-seq
MIRT888900	hsa-miR-561	CLIP-seq
MIRT888901	hsa-miR-562	CLIP-seq
MIRT888902	hsa-miR-570	CLIP-seq
MIRT888903	hsa-miR-571	CLIP-seq
MIRT888904	hsa-miR-574-5p	CLIP-seq
MIRT888905	hsa-miR-583	CLIP-seq
MIRT888906	hsa-miR-587	CLIP-seq
MIRT888907	hsa-miR-622	CLIP-seq
MIRT888908	hsa-miR-633	CLIP-seq
MIRT888909	hsa-miR-648	CLIP-seq
MIRT888910	hsa-miR-656	CLIP-seq
MIRT888911	hsa-miR-663b	CLIP-seq
MIRT888912	hsa-miR-759	CLIP-seq
MIRT888913	hsa-miR-769-3p	CLIP-seq
MIRT888914	hsa-miR-889	CLIP-seq
MIRT888915	hsa-miR-892a	CLIP-seq
MIRT888793	hsa-miR-124	CLIP-seq
MIRT888795	hsa-miR-1297	CLIP-seq
MIRT888796	hsa-miR-132	CLIP-seq
MIRT888804	hsa-miR-2054	CLIP-seq
MIRT888805	hsa-miR-212	CLIP-seq
MIRT888808	hsa-miR-26a	CLIP-seq
MIRT888809	hsa-miR-26b	CLIP-seq
MIRT888812	hsa-miR-30a	CLIP-seq
MIRT888813	hsa-miR-30b	CLIP-seq
MIRT888814	hsa-miR-30c	CLIP-seq
MIRT888815	hsa-miR-30d	CLIP-seq
MIRT888816	hsa-miR-30e	CLIP-seq
MIRT888825	hsa-miR-339-5p	CLIP-seq
MIRT888826	hsa-miR-33a	CLIP-seq
MIRT888827	hsa-miR-33b	CLIP-seq
MIRT888828	hsa-miR-34a	CLIP-seq
MIRT888829	hsa-miR-34b	CLIP-seq
MIRT888830	hsa-miR-34c-5p	CLIP-seq
MIRT888831	hsa-miR-3616-3p	CLIP-seq
MIRT888839	hsa-miR-3689a-3p	CLIP-seq
MIRT888840	hsa-miR-3689c	CLIP-seq
MIRT888842	hsa-miR-3714	CLIP-seq
MIRT888844	hsa-miR-3910	CLIP-seq
MIRT888850	hsa-miR-4302	CLIP-seq
MIRT888852	hsa-miR-4328	CLIP-seq
MIRT888853	hsa-miR-4420	CLIP-seq
MIRT888855	hsa-miR-4436b-3p	CLIP-seq
MIRT888856	hsa-miR-4465	CLIP-seq
MIRT888860	hsa-miR-449a	CLIP-seq
MIRT888861	hsa-miR-449b	CLIP-seq
MIRT888866	hsa-miR-4668-3p	CLIP-seq
MIRT888873	hsa-miR-4728-5p	CLIP-seq
MIRT888884	hsa-miR-498	CLIP-seq
MIRT888886	hsa-miR-506	CLIP-seq
MIRT888891	hsa-miR-548ac	CLIP-seq
MIRT888893	hsa-miR-548ae	CLIP-seq
MIRT888894	hsa-miR-548aj	CLIP-seq
MIRT888895	hsa-miR-548am	CLIP-seq
MIRT888896	hsa-miR-548d-3p	CLIP-seq
MIRT888898	hsa-miR-548x	CLIP-seq
MIRT888899	hsa-miR-548z	CLIP-seq
MIRT888906	hsa-miR-587	CLIP-seq
MIRT888908	hsa-miR-633	CLIP-seq
MIRT888909	hsa-miR-648	CLIP-seq
MIRT888789	hsa-miR-103a	CLIP-seq
MIRT888790	hsa-miR-107	CLIP-seq
MIRT888793	hsa-miR-124	CLIP-seq
MIRT888795	hsa-miR-1297	CLIP-seq
MIRT888796	hsa-miR-132	CLIP-seq
MIRT2199865	hsa-miR-1343	CLIP-seq
MIRT888800	hsa-miR-148a	CLIP-seq
MIRT888801	hsa-miR-148b	CLIP-seq
MIRT888802	hsa-miR-152	CLIP-seq
MIRT888804	hsa-miR-2054	CLIP-seq
MIRT888805	hsa-miR-212	CLIP-seq
MIRT888808	hsa-miR-26a	CLIP-seq
MIRT888809	hsa-miR-26b	CLIP-seq
MIRT888810	hsa-miR-299-5p	CLIP-seq
MIRT888811	hsa-miR-300	CLIP-seq
MIRT888812	hsa-miR-30a	CLIP-seq
MIRT888813	hsa-miR-30b	CLIP-seq
MIRT888814	hsa-miR-30c	CLIP-seq
MIRT888815	hsa-miR-30d	CLIP-seq
MIRT888816	hsa-miR-30e	CLIP-seq
MIRT888819	hsa-miR-3153	CLIP-seq
MIRT888820	hsa-miR-3163	CLIP-seq
MIRT888821	hsa-miR-3177-5p	CLIP-seq
MIRT888823	hsa-miR-323-5p	CLIP-seq
MIRT888825	hsa-miR-339-5p	CLIP-seq
MIRT888828	hsa-miR-34a	CLIP-seq
MIRT888830	hsa-miR-34c-5p	CLIP-seq
MIRT888831	hsa-miR-3616-3p	CLIP-seq
MIRT888832	hsa-miR-3646	CLIP-seq
MIRT888833	hsa-miR-3653	CLIP-seq
MIRT2199866	hsa-miR-3658	CLIP-seq
MIRT888834	hsa-miR-3659	CLIP-seq
MIRT888836	hsa-miR-3674	CLIP-seq
MIRT2199867	hsa-miR-3684	CLIP-seq
MIRT888839	hsa-miR-3689a-3p	CLIP-seq
MIRT888840	hsa-miR-3689c	CLIP-seq
MIRT888842	hsa-miR-3714	CLIP-seq
MIRT888843	hsa-miR-381	CLIP-seq
MIRT888844	hsa-miR-3910	CLIP-seq
MIRT888845	hsa-miR-3944-5p	CLIP-seq
MIRT888846	hsa-miR-3978	CLIP-seq
MIRT888847	hsa-miR-410	CLIP-seq
MIRT888848	hsa-miR-4272	CLIP-seq
MIRT888849	hsa-miR-4275	CLIP-seq
MIRT888850	hsa-miR-4302	CLIP-seq
MIRT888851	hsa-miR-4318	CLIP-seq
MIRT888852	hsa-miR-4328	CLIP-seq
MIRT888855	hsa-miR-4436b-3p	CLIP-seq
MIRT888856	hsa-miR-4465	CLIP-seq
MIRT888857	hsa-miR-4477a	CLIP-seq
MIRT888859	hsa-miR-4495	CLIP-seq
MIRT888860	hsa-miR-449a	CLIP-seq
MIRT888861	hsa-miR-449b	CLIP-seq
MIRT888864	hsa-miR-4658	CLIP-seq
MIRT888865	hsa-miR-4666-3p	CLIP-seq
MIRT888870	hsa-miR-4693-5p	CLIP-seq
MIRT2199868	hsa-miR-4719	CLIP-seq
MIRT888873	hsa-miR-4728-5p	CLIP-seq
MIRT888875	hsa-miR-4758-5p	CLIP-seq
MIRT888877	hsa-miR-4761-5p	CLIP-seq
MIRT888879	hsa-miR-4775	CLIP-seq
MIRT2199869	hsa-miR-4789-5p	CLIP-seq
MIRT2199870	hsa-miR-4794	CLIP-seq
MIRT888884	hsa-miR-498	CLIP-seq
MIRT888885	hsa-miR-500a	CLIP-seq
MIRT888886	hsa-miR-506	CLIP-seq
MIRT888891	hsa-miR-548ac	CLIP-seq
MIRT888893	hsa-miR-548ae	CLIP-seq
MIRT888894	hsa-miR-548aj	CLIP-seq
MIRT888895	hsa-miR-548am	CLIP-seq
MIRT888896	hsa-miR-548d-3p	CLIP-seq
MIRT888897	hsa-miR-548t	CLIP-seq
MIRT888898	hsa-miR-548x	CLIP-seq
MIRT888899	hsa-miR-548z	CLIP-seq
MIRT888901	hsa-miR-562	CLIP-seq
MIRT888902	hsa-miR-570	CLIP-seq
MIRT888904	hsa-miR-574-5p	CLIP-seq
MIRT888908	hsa-miR-633	CLIP-seq
MIRT888909	hsa-miR-648	CLIP-seq
MIRT888910	hsa-miR-656	CLIP-seq
MIRT888915	hsa-miR-892a	CLIP-seq
MIRT888792	hsa-miR-1236	CLIP-seq
MIRT888794	hsa-miR-1267	CLIP-seq
MIRT888804	hsa-miR-2054	CLIP-seq
MIRT888812	hsa-miR-30a	CLIP-seq
MIRT888813	hsa-miR-30b	CLIP-seq
MIRT888814	hsa-miR-30c	CLIP-seq
MIRT888815	hsa-miR-30d	CLIP-seq
MIRT888816	hsa-miR-30e	CLIP-seq
MIRT888818	hsa-miR-3147	CLIP-seq
MIRT888821	hsa-miR-3177-5p	CLIP-seq
MIRT888822	hsa-miR-3182	CLIP-seq
MIRT888823	hsa-miR-323-5p	CLIP-seq
MIRT888825	hsa-miR-339-5p	CLIP-seq
MIRT888828	hsa-miR-34a	CLIP-seq
MIRT888830	hsa-miR-34c-5p	CLIP-seq
MIRT888831	hsa-miR-3616-3p	CLIP-seq
MIRT888839	hsa-miR-3689a-3p	CLIP-seq
MIRT888840	hsa-miR-3689c	CLIP-seq
MIRT888854	hsa-miR-4425	CLIP-seq
MIRT888855	hsa-miR-4436b-3p	CLIP-seq
MIRT888859	hsa-miR-4495	CLIP-seq
MIRT888860	hsa-miR-449a	CLIP-seq
MIRT888861	hsa-miR-449b	CLIP-seq
MIRT888862	hsa-miR-450b-3p	CLIP-seq
MIRT888863	hsa-miR-4652-3p	CLIP-seq
MIRT888873	hsa-miR-4728-5p	CLIP-seq
MIRT888874	hsa-miR-4753-3p	CLIP-seq
MIRT888877	hsa-miR-4761-5p	CLIP-seq
MIRT888878	hsa-miR-4768-5p	CLIP-seq
MIRT888884	hsa-miR-498	CLIP-seq
MIRT888901	hsa-miR-562	CLIP-seq
MIRT888908	hsa-miR-633	CLIP-seq
MIRT888913	hsa-miR-769-3p	CLIP-seq
MIRT888796	hsa-miR-132	CLIP-seq
MIRT888805	hsa-miR-212	CLIP-seq
MIRT888799	hsa-miR-137	CLIP-seq
MIRT888824	hsa-miR-338-5p	CLIP-seq
MIRT888841	hsa-miR-3689d	CLIP-seq
MIRT888847	hsa-miR-410	CLIP-seq
MIRT888866	hsa-miR-4668-3p	CLIP-seq
MIRT888867	hsa-miR-4668-5p	CLIP-seq
MIRT888868	hsa-miR-4681	CLIP-seq
MIRT888871	hsa-miR-4694-3p	CLIP-seq
MIRT888880	hsa-miR-4802-5p	CLIP-seq
MIRT2502569	hsa-miR-4803	CLIP-seq
MIRT888882	hsa-miR-494	CLIP-seq
MIRT888883	hsa-miR-495	CLIP-seq
MIRT888887	hsa-miR-513a-5p	CLIP-seq
MIRT888890	hsa-miR-522	CLIP-seq
MIRT888892	hsa-miR-548ad	CLIP-seq
MIRT888900	hsa-miR-561	CLIP-seq
MIRT888902	hsa-miR-570	CLIP-seq
MIRT888907	hsa-miR-622	CLIP-seq
MIRT888912	hsa-miR-759	CLIP-seq
MIRT888799	hsa-miR-137	CLIP-seq
MIRT888824	hsa-miR-338-5p	CLIP-seq
MIRT888847	hsa-miR-410	CLIP-seq
MIRT888867	hsa-miR-4668-5p	CLIP-seq
MIRT888868	hsa-miR-4681	CLIP-seq
MIRT888871	hsa-miR-4694-3p	CLIP-seq
MIRT888880	hsa-miR-4802-5p	CLIP-seq
MIRT2502569	hsa-miR-4803	CLIP-seq
MIRT888882	hsa-miR-494	CLIP-seq
MIRT888883	hsa-miR-495	CLIP-seq
MIRT888887	hsa-miR-513a-5p	CLIP-seq
MIRT888890	hsa-miR-522	CLIP-seq
MIRT888892	hsa-miR-548ad	CLIP-seq
MIRT888900	hsa-miR-561	CLIP-seq
MIRT888902	hsa-miR-570	CLIP-seq
MIRT888912	hsa-miR-759	CLIP-seq

Show/Hide all (26)

GO ID	Ontology	Definition	Evidence	Reference
GO:0000166	Function	Nucleotide binding	IEA
GO:0000228	Component	Nuclear chromosome	IDA	9326634
GO:0000785	Component	Chromatin	IBA
GO:0003677	Function	DNA binding	IBA
GO:0003677	Function	DNA binding	IEA
GO:0003682	Function	Chromatin binding	IBA
GO:0005515	Function	Protein binding	IPI	22419161, 26751641, 32814053
GO:0005524	Function	ATP binding	IEA
GO:0005634	Component	Nucleus	IBA
GO:0005634	Component	Nucleus	IDA	22046413
GO:0005634	Component	Nucleus	IEA
GO:0005654	Component	Nucleoplasm	TAS
GO:0005737	Component	Cytoplasm	IDA	22046413
GO:0005737	Component	Cytoplasm	IEA
GO:0006325	Process	Chromatin organization	IEA
GO:0006338	Process	Chromatin remodeling	IEA
GO:0006338	Process	Chromatin remodeling	IEA
GO:0006338	Process	Chromatin remodeling	IMP	28866611
GO:0016787	Function	Hydrolase activity	IEA
GO:0016887	Function	ATP hydrolysis activity	IBA
GO:0016887	Function	ATP hydrolysis activity	IEA
GO:0034728	Process	Nucleosome organization	IBA
GO:0042393	Function	Histone binding	IBA
GO:0043923	Process	Host-mediated activation of viral transcription	IMP	25297984
GO:0140002	Function	Histone H3K4me3 reader activity	IDA	21029866
GO:0140658	Function	ATP-dependent chromatin remodeler activity	IBA

MIM	HGNC	e!Ensembl
602118	1915	ENSG00000153922

O14646

Protein name

Chromodomain-helicase-DNA-binding protein 1 (CHD-1) (EC 3.6.4.-) (ATP-dependent helicase CHD1)

Protein function

ATP-dependent chromatin-remodeling factor which functions as substrate recognition component of the transcription regulatory histone acetylation (HAT) complex SAGA. Regulates polymerase II transcription. Also required for efficient transcription

PDB

2B2T , 2B2U , 2B2V , 2B2W , 2B2Y , 2N39 , 4B4C , 4NW2 , 4O42 , 5AFW , 8UMG

Family and domains

Pfam

Accession	ID	Position in sequence	Description	Type
PF00385	Chromo	273 → 355	Chromo (CHRromatin Organisation MOdifier) domain	Domain
PF00385	Chromo	389 → 443	Chromo (CHRromatin Organisation MOdifier) domain	Domain
PF00176	SNF2_N	475 → 765	SNF2 family N-terminal domain	Family
PF00271	Helicase_C	788 → 902	Helicase conserved C-terminal domain	Family
PF18375	CDH1_2_SANT_HL1	1124 → 1210	CDH1/2 SANT-Helical linker 1	Domain
PF13907	DUF4208	1404 → 1499	Domain of unknown function (DUF4208)	Domain

Tissue specificity

TISSUE SPECIFICITY: Expressed in many tissues including in the brain, where the highest level of expression is found in the cerebellum and basal ganglia. {ECO:0000269|PubMed:28866611}.

Sequence

MNGHSDEESVRNSSGESSQSDDDSGSASGSGSGSSSGSSSDGSSSQSGSSDSDSGSESGS
QSESESDTSRENKVQAKPPKVDGAEFWKSSPSILAVQRSAILKKQQQQQQQQQHQASSNS
GSEEDSSSSEDSDDSSSEVKRKKHKDEDWQMSGSGSPSQSGSDSESEEEREKSSCDETES
DYEPKNKVKSRKPQNRSKSKNGKKILGQKKRQIDSSEEDDDEEDYDNDKRSSRRQATVNV
SYKEDEEMKTDSDDLLEVCGEDVPQPEEEEFETIERFMDCRIGRKGATGATTTIYAVEAD
GDPNAGFEKNKEPGEIQYLIKWKGWSHIHNTWETEETLKQQNVRGMKKLDNYKKKDQETK
RWLKNASPEDVEYYNCQQELTDDLHKQYQIVERIIAHSNQKSAAGYPDYYCKWQGLPYSE
CSWEDGALISKKFQACIDEYFSRNQSKTTPFKDCKVLKQRPRFVALKKQPSYIGGHEGLE
LRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLS
TLTSWQREIQTWASQMNAVVYLGDINSRNMIRTHEWTHHQTKRLKFNILLTTYEILLKDK
AFLGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFI
MPEKFSSWEDFEEEHGKGREYGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSA
LQKQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDNNEFYNKQEAL
QHLIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKG
ELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHR
IGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTVLHTGSAPSSSTPF
NKEELSAILKFGAEELFKEPEGEEQEPQEMDIDEILKRAETHENEPGPLTVGDELLSQFK
VANFSNMDEDDIELEPERNSKNWEEIIPEDQRRRLEEEERQKELEEIYMLPRMRNCAKQI
SFNGSEGRRSRSRRYSGSDSDSISEGKRPKKRGRPRTIPRENIKGFSDAEIRRFIKSYKK
FGGPLERLDAIARDAELVDKSETDLRRLGELVHNGCIKALKDSSSGTERTGGRLGKVKGP
TFRISGVQVNAKLVISHEEELIPLHKSIPSDPEERKQYTIPCHTKAAHFDIDWGKEDDSN
LLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIKLLSRDLAKK
EALSGAGSSKRRKARAKKNKAMKSIKVKEEIKSDSSPLPSEKSDEDDDKLSESKSDGRER
SKKSSVSDAPVHITASGEPVPISEESEELDQKTFSICKERMRPVKAALKQLDRPEKGLSE
REQLEHTRQCLIKIGDHITECLKEYTNPEQIKQWRKNLWIFVSKFTEFDARKLHKLYKHA
IKKRQESQQNSDQNSNLNPHVIRNPDVERLKENTNHDDSSRDSYSSDRHLTQYHDHHKDR
HQGDSYKKSDSRKRPYSSFSNGKDHRDWDHYKQDSRYYSDREKHRKLDDHRSRDHRSNLE
GSLKDRSHSDHRSHSDHRLHSDHRSSSEYTHHKSSRDYRYHSDWQMDHRASSSGPRSPLD
QRSPYGSRSPFEHSVEHKSTPEHTWSSRKT

Sequence length

1710

Interactions

View interactions

	Reactome
			Estrogen-dependent gene expression

120

Show/Hide Causal Diseases (1)

Phenotype Name	Clinical Significance	dbSNP ID	RCV Accession
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Pilarowski-Bjornsson syndrome	Likely pathogenic; Pathogenic	rs2479646862, rs2479520814, rs2479716393, rs1344698815, rs2479719966, rs1554078349, rs1554078856	RCV002291456 RCV003123418 RCV003149117 RCV003333354 RCV003990657 RCV000505806 RCV000505811

Show/Hide Unknown Diseases (16)

Phenotype Name	Clinical Significance	dbSNP ID	RCV Accession
Unknown Diseases with uncertain, conflicting, or no pathogenic evidence in ClinVar
Acute myeloid leukemia	Benign; Likely benign	rs61759467	RCV005913085
Cervical cancer	Benign; Likely benign	rs144567251, rs61759467	RCV005930146 RCV005913088
CHD1-related disorder	Likely benign; Uncertain significance; Benign	rs371891649, rs573978009, rs1275876630, rs2479681445, rs1748204859, rs2479579923, rs142842461, rs138975765, rs138351327, rs200865526, rs376850493, rs377125099, rs34128229, rs2479681935, rs141802026 View all (9 more)	RCV003951341 RCV003918999 RCV003404202 RCV003399933 RCV003414270 RCV003397762 RCV003954192 RCV003929139 RCV003954193 RCV003954194 RCV003966411 RCV003919202 RCV003939004 RCV003911785 RCV003897385 RCV003977185 RCV003979461 RCV003961680 RCV003924434 RCV003936866 RCV003981964 RCV003983580 RCV003966805 RCV003905970
Clear cell carcinoma of kidney	Benign; Likely benign	rs61759467	RCV005913089
Complex neurodevelopmental disorder	Likely benign	rs138351327	RCV005356436
EBV-positive nodal T- and NK-cell lymphoma	Likely benign	rs2479415984, rs2479331415	RCV004558121 RCV004558122
Gastric cancer	Benign; Likely benign	rs61759467	RCV005913091
Hepatocellular carcinoma	Benign; Likely benign	rs61759467	RCV005913086
Melanoma	Benign; Likely benign	rs61759467	RCV005913093
Neurodevelopmental abnormality	Likely benign	rs1751687577	RCV001264681
Neurodevelopmental disorder	Uncertain significance	rs2112324458	RCV002277642
Nonpapillary renal cell carcinoma	Benign; Likely benign	rs61759467	RCV005913087
Ovarian serous cystadenocarcinoma	Benign	rs144567251	RCV005930148
Sarcoma	Benign; Likely benign	rs144567251, rs61759467	RCV005930147 RCV005913090
See cases	Uncertain significance	rs2112435807	RCV002252542
Thyroid cancer, nonmedullary, 1	Benign; Likely benign	rs144567251, rs61759467	RCV005930149 RCV005913092

Show/Hide Text Mining Associations (31)

Disease Name	Relationship Type	References
Associations from Text MiningDisease associations identified through Pubtator
Adenocarcinoma	Associate	30656528
Alzheimer Disease	Associate	31545826
Apraxias	Associate	28866611
Autistic Disorder	Associate	28866611
Azoospermia	Associate	40215689
Breast Neoplasms	Associate	22048254
Carcinoma Hepatocellular	Associate	30043858
Developmental Disabilities	Associate	28866611
Diabetes Mellitus	Associate	31545826
Drug Related Side Effects and Adverse Reactions	Associate	29018037
Glioma	Associate	31667976
Infections	Associate	25297984
Learning Disabilities	Associate	28866611
Leukemia Myeloid Acute	Associate	25879624, 37041565
Lymphoma	Associate	30043858
Mesothelioma Malignant	Associate	34638565
Myelodysplastic Syndromes	Associate	37041565
Neoplasm Metastasis	Associate	30656528, 30989488, 33414516
Neoplasms	Inhibit	22179824, 24563616, 30989488, 33414516
Neoplasms	Associate	25175909, 25320358, 28166537, 29662167, 30043858, 34168052, 37041565
Pancreatic Neoplasms	Associate	22046413
Personality Disorders	Associate	33846123
Prostatic Neoplasms	Associate	22179824, 22722839, 23917376, 24563616, 25175909, 25189356, 25201530, 29662167, 30068710, 31222142, 31300540, 32763409, 33414516, 33846123, 34168052, 36059000, 36629160 View all (2 more)
Prostatic Neoplasms	Inhibit	31222142
Prostatic Neoplasms Castration Resistant	Associate	23917376, 25320358, 30068710
Prostatitis	Associate	22179824, 30656528, 31300540
Purpura Thrombocytopenic Idiopathic	Associate	33222560
Sleep Wake Disorders	Associate	31545826
Stomach Neoplasms	Associate	16555931, 30043858
Stroke	Associate	31545826
Thakker Donnai syndrome	Associate	28866611

CHD1 (chromodomain helicase DNA binding protein 1)