Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
10940
Gene name Gene Name - the full gene name approved by the HGNC.
POP1 ribonuclease P/MRP subunit
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
POP1
Synonyms (NCBI Gene) Gene synonyms aliases
ANXD2
Disease Acronyms (UniProt) Disease acronyms from UniProt database
ANXD2
Chromosome Chromosome number
8
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
8q22.2
Summary Summary of gene provided in NCBI Entrez Gene.
This gene encodes the protein subunit of two different small nucleolar ribonucleoprotein complexes: the endoribonuclease for mitochondrial RNA processing complex and the ribonuclease P complex. The encoded protein is a ribonuclease that localizes to the n
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs374828868 G>A Pathogenic Coding sequence variant, missense variant, genic downstream transcript variant
rs769183311 C>G,T Pathogenic Missense variant, coding sequence variant
rs1060505023 C>T Pathogenic Genic downstream transcript variant, missense variant, coding sequence variant
rs1060505024 C>- Pathogenic Genic downstream transcript variant, frameshift variant, coding sequence variant
rs1060505025 G>T Pathogenic Missense variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT025418 hsa-miR-34a-5p Proteomics 21566225
MIRT032295 hsa-let-7b-5p Proteomics 18668040
MIRT044722 hsa-miR-320a CLASH 23622248
MIRT512691 hsa-miR-4457 PAR-CLIP 23446348
MIRT512690 hsa-miR-125b-2-3p PAR-CLIP 23446348
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0000172 Component Ribonuclease MRP complex IBA 21873635
GO:0000172 Component Ribonuclease MRP complex IDA 8918471, 16723659
GO:0001682 Process TRNA 5'-leader removal IDA 16723659, 30454648
GO:0001682 Process TRNA 5'-leader removal TAS
GO:0003723 Function RNA binding HDA 22658674
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
602486 30129 ENSG00000104356
Protein
UniProt ID Q99575
Protein name Ribonucleases P/MRP protein subunit POP1 (hPOP1)
Protein function Component of ribonuclease P, a ribonucleoprotein complex that generates mature tRNA molecules by cleaving their 5'-ends (PubMed:30454648, PubMed:8918471). Also a component of the MRP ribonuclease complex, which cleaves pre-rRNA sequences (PubMed
PDB 6AHR , 6AHU
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF06978 POP1 107 190 Ribonucleases P/MRP protein subunit POP1 Family
PF06978 POP1 168 258 Ribonucleases P/MRP protein subunit POP1 Family
PF08170 POPLD 617 708 POPLD (NUC188) domain Domain
Sequence
MSNAKERKHAKKMRNQPTNVTLSSGFVADRGVKHHSGGEKPFQAQKQEPHPGTSRQRQTR
VNPHSLPDPEVNEQSSSKGMFRKKGGWKAGPEGTSQEIPKYITASTFAQARAAEISAMLK
AVTQKSSNSLVFQTLPRHMRRRAMSHNVKRLPRRLQEIAQKEAEKAV
HQKKEHSKNKCHK
ARRCHMNRTL
EFNRRQKKNIWLETHIWHAKRFHMVKKWGYCLGERPTVKSHRACYRAMTN
RCLLQDLSYYCCLELKGK
EEEILKALSGMCNIDTGLTFAAVHCLSGKRQGSLVLYRVNKY
PREMLGPVTFIWKSQRTPGDPSESRQLWIWLHPTLKQDILEEIKAACQCVEPIKSAVCIA
DPLPTPSQEKSQTELPDEKIGKKRKRKDDGENAKPIKKIIGDGTRDPCLPYSWISPTTGI
IISDLTMEMNRFRLIGPLSHSILTEAIKAASVHTVGEDTEETPHRWWIETCKKPDSVSLH
CRQEAIFELLGGITSPAEIPAGTILGLTVGDPRINLPQKKSKALPNPEKCQDNEKVRQLL
LEGVPVECTHSFIWNQDICKSVTENKISDQDLNRMRSELLVPGSQLILGPHESKIPILLI
QQPGKVTGEDRLGWGSGWDVLLPKGWGMAFWIPFIYRGVRVGGLKESAVHSQYKRSPNVP
GDFPDCPAGMLFAEEQAKNLLEKYKRRPPAKRPNYVKLGTLAPFCCPW
EQLTQDWESRVQ
AYEEPSVASSPNGKESDLRRSEVPCAPMPKKTHQPSDEVGTSIEHPREAEEVMDAGCQES
AGPERITDQEASENHVAATGSHLCVLRSRKLLKQLSAWCGPSSEDSRGGRRAPGRGQQGL
TREACLSILGHFPRALVWVSLSLLSKGSPEPHTMICVPAKEDFLQLHEDWHYCGPQESKH
SDPFRSKILKQKEKKKREKRQKPGRASSDGPAGEEPVAGQEALTLGLWSGPLPRVTLHCS
RTLLGFVTQGDFSMAVGCGEALGFVSLTGLLDMLSSQPAAQRGLVLLRPPASLQYRFARI
AIEV
Sequence length 1024
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  Ribosome biogenesis in eukaryotes   tRNA processing in the nucleus
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Anauxetic dysplasia Anauxetic dysplasia, ANAUXETIC DYSPLASIA 2 rs199476103, rs727502774, rs1554651507, rs727502776, rs727502778, rs1554651469, rs878853178, rs796065036, rs1823615821, rs902313238, rs786204684, rs1554651506, rs753874439, rs769183311, rs1060505023
View all (65 more)
21455487, 27380734, 28067412
Brachydactyly Brachydactyly rs121908949, rs28937580, rs121909082, rs104894122, rs863223289, rs863223290, rs104894121, rs1587657302, rs863223292, rs74315386, rs74315387, rs28936397, rs753691079, rs121909348, rs121917852
View all (22 more)
Breast cancer Malignant neoplasm of breast rs587776547, rs1137887, rs137853007, rs587776650, rs80359351, rs80359714, rs121917783, rs104886456, rs121964878, rs80359874, rs80357868, rs80357508, rs387906843, rs80357569, rs80358158
View all (309 more)
Pyle metaphyseal dysplasia Pyle metaphyseal dysplasia rs879255603, rs755007671, rs879253778
Unknown
Disease term Disease name Evidence References Source
Anauxetic Dysplasia anauxetic dysplasia GenCC
Hypertension Hypertension GWAS
Associations from Text Mining
Disease Name Relationship Type References
Anauxetic dysplasia Associate 21455487, 28067412
Breast Neoplasms Associate 36084948
Cartilage hair hypoplasia Associate 28067412
Colorectal Neoplasms Associate 32828126
Growth Disorders Associate 28067412
HEM dysplasia Associate 21455487, 28067412
Precursor Cell Lymphoblastic Leukemia Lymphoma Associate 28067412
Prostatic Neoplasms Associate 19893039
Scleroderma Systemic Associate 12176814