Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
10855
Gene name Gene Name - the full gene name approved by the HGNC.
Heparanase
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
HPSE
Synonyms (NCBI Gene) Gene synonyms aliases
HPA, HPA1, HPR1, HPSE1, HSE1
Chromosome Chromosome number
4
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
4q21.23
Summary Summary of gene provided in NCBI Entrez Gene.
Heparan sulfate proteoglycans are major components of the basement membrane and extracellular matrix. The protein encoded by this gene is an enzyme that cleaves heparan sulfate proteoglycans to permit cell movement through remodeling of the extracellular
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT005537 hsa-miR-1258 Immunohistochemistry, In situ hybridization, Luciferase reporter assay, qRT-PCR 21266359
MIRT702813 hsa-miR-7153-3p HITS-CLIP 23313552
MIRT702812 hsa-miR-508-5p HITS-CLIP 23313552
MIRT702806 hsa-miR-183-5p HITS-CLIP 23313552
MIRT685087 hsa-miR-6849-3p HITS-CLIP 23313552
Transcription factors
Transcription factor Regulation Reference
EGR1 Activation 15709168;16007175
EGR1 Unknown 17656651;20403028
NFKB1 Activation 14558943;17715045
POU4F1 Unknown 16112651
RELA Activation 14558943;17715045
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0004566 Function Beta-glucuronidase activity TAS 10395325
GO:0005515 Function Protein binding IPI 15292202, 20561914, 20634491
GO:0005576 Component Extracellular region TAS
GO:0005634 Component Nucleus IDA 20309870
GO:0005654 Component Nucleoplasm IDA
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
604724 5164 ENSG00000173083
Protein
UniProt ID Q9Y251
Protein name Heparanase (EC 3.2.1.166) (Endo-glucoronidase) (Heparanase-1) (Hpa1) [Cleaved into: Heparanase 8 kDa subunit; Heparanase 50 kDa subunit]
Protein function Endoglycosidase that cleaves heparan sulfate proteoglycans (HSPGs) into heparan sulfate side chains and core proteoglycans. Participates in extracellular matrix (ECM) degradation and remodeling. Selectively cleaves the linkage between a glucuron
PDB 5E8M , 5E97 , 5E98 , 5E9B , 5E9C , 5L9Y , 5L9Z , 5LA4 , 5LA7 , 6ZDM , 7PR7 , 7PR8 , 7PRT , 7RG8 , 7YI7 , 7YJC , 8B0B , 8B0C , 8BAC , 8CQI , 8E07 , 8E08 , 8JYG , 8OHQ , 8OHR
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF03662 Glyco_hydro_79n 146 370 Glycosyl hydrolase family 79, N-terminal domain Domain
Tissue specificity TISSUE SPECIFICITY: Highly expressed in placenta and spleen and weakly expressed in lymph node, thymus, peripheral blood leukocytes, bone marrow, endothelial cells, fetal liver and tumor tissues. Also expressed in hair follicles, specifically in both Henl
Sequence
MLLRSKPALPPPLMLLLLGPLGPLSPGALPRPAQAQDVVDLDFFTQEPLHLVSPSFLSVT
IDANLATDPRFLILLGSPKLRTLARGLSPAYLRFGGTKTDFLIFDPKKESTFEERSYWQS
QVNQDICKYGSIPPDVEEKLRLEWPYQEQLLLREHYQKKFKNSTYSRSSVDVLYTFANCS
GLDLIFGLNALLRTADLQWNSSNAQLLLDYCSSKGYNISWELGNEPNSFLKKADIFINGS
QLGEDFIQLHKLLRKSTFKNAKLYGPDVGQPRRKTAKMLKSFLKAGGEVIDSVTWHHYYL
NGRTATKEDFLNPDVLDIFISSVQKVFQVVESTRPGKKVWLGETSSAYGGGAPLLSDTFA
AGFMWLDKLG
LSARMGIEVVMRQVFFGAGNYHLVDENFDPLPDYWLSLLFKKLVGTKVLM
ASVQGSKRRKLRVYLHCTNTDNPRYKEGDLTLYAINLHNVTKYLRLPYPFSNKQVDKYLL
RPLGPHGLLSKSVQLNGLTLKMVDDQTLPPLMEKPLRPGSSLGLPAFSYSFFVIRNAKVA
ACI
Sequence length 543
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  Glycosaminoglycan degradation
Metabolic pathways
Proteoglycans in cancer
  HS-GAG degradation
Neutrophil degranulation
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Breast cancer Malignant neoplasm of breast rs587776547, rs1137887, rs137853007, rs587776650, rs80359351, rs80359714, rs121917783, rs104886456, rs121964878, rs80359874, rs80357868, rs80357508, rs387906843, rs80357569, rs80358158
View all (309 more)
16391819
Breast carcinoma Breast Carcinoma rs80359671, rs11540652, rs28934575, rs28897672, rs137886232, rs193922376, rs80357783, rs80359306, rs80359405, rs80359507, rs80359598, rs80358429, rs397507683, rs397515636, rs80359451
View all (71 more)
16391819
Glomerulonephritis IGA Glomerulonephritis rs778043831 25133636
Marfan syndrome Mammary Carcinoma, Human rs137854456, rs137854457, rs267606796, rs137854458, rs137854459, rs137854460, rs137854470, rs137854471, rs267606797, rs137854461, rs137854462, rs137854463, rs869025419, rs137854464, rs137854465
View all (942 more)
16391819
Unknown
Disease term Disease name Evidence References Source
Mental depression Depressive disorder, Unipolar Depression, Major Depressive Disorder 18180755 ClinVar
Associations from Text Mining
Disease Name Relationship Type References
Abortion Habitual Associate 12738509
Abortion Spontaneous Inhibit 23907942
Acute Disease Associate 20075159
Acute Kidney Injury Stimulate 35336857
Adenocarcinoma Stimulate 19749739
Adenocarcinoma Of Esophagus Associate 19749739
Adenocarcinoma of Lung Associate 23649655
Adenoma Associate 26972718
Ameloblastoma Associate 20339231
Antiphospholipid Syndrome Associate 34107171