Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
10841
Gene name Gene Name - the full gene name approved by the HGNC.
Formimidoyltransferase cyclodeaminase
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
FTCD
Synonyms (NCBI Gene) Gene synonyms aliases
LCHC1
Chromosome Chromosome number
21
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
21q22.3
Summary Summary of gene provided in NCBI Entrez Gene.
The protein encoded by this gene is a bifunctional enzyme that channels 1-carbon units from formiminoglutamate, a metabolite of the histidine degradation pathway, to the folate pool. Mutations in this gene are associated with glutamate formiminotransferas
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs149266909 A>G,T Pathogenic Non coding transcript variant, coding sequence variant, stop gained, synonymous variant, genic downstream transcript variant, missense variant
rs200283734 G>A Conflicting-interpretations-of-pathogenicity Genic downstream transcript variant, missense variant, non coding transcript variant, coding sequence variant
rs398124234 ->C Pathogenic-likely-pathogenic, conflicting-interpretations-of-pathogenicity Frameshift variant, coding sequence variant, non coding transcript variant
rs777099958 ->C Conflicting-interpretations-of-pathogenicity Frameshift variant, genic downstream transcript variant, coding sequence variant, non coding transcript variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT018835 hsa-miR-335-5p Microarray 18185580
MIRT715545 hsa-miR-483-3p HITS-CLIP 19536157
MIRT715544 hsa-miR-668-3p HITS-CLIP 19536157
MIRT715543 hsa-miR-4722-3p HITS-CLIP 19536157
MIRT715542 hsa-miR-6727-3p HITS-CLIP 19536157
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0000139 Component Golgi membrane IDA 14697341
GO:0000139 Component Golgi membrane ISS
GO:0005515 Function Protein binding IPI 25416956, 32296183
GO:0005542 Function Folic acid binding IEA
GO:0005737 Component Cytoplasm TAS 10029623
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
606806 3974 ENSG00000160282
Protein
UniProt ID O95954
Protein name Formimidoyltransferase-cyclodeaminase (Formiminotransferase-cyclodeaminase) (FTCD) (LCHC1) [Includes: Glutamate formimidoyltransferase (EC 2.1.2.5) (Glutamate formiminotransferase) (Glutamate formyltransferase); Formimidoyltetrahydrofolate cyclodeaminase
Protein function Folate-dependent enzyme, that displays both transferase and deaminase activity. Serves to channel one-carbon units from formiminoglutamate to the folate pool. ; Binds and promotes bundling of vimentin fila
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF07837 FTCD_N 4 179 Formiminotransferase domain, N-terminal subdomain Domain
PF02971 FTCD 181 324 Formiminotransferase domain Domain
PF04961 FTCD_C 339 520 Formiminotransferase-cyclodeaminase Family
Sequence
Sequence length 541
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  Histidine metabolism
One carbon pool by folate
Metabolic pathways
  Histidine catabolism
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Anemia Anemia, Megaloblastic rs118204044, rs118204045, rs118204046, rs121918330, rs869320719, rs869312029, rs121918332, rs869320724, rs767094129, rs786205058, rs786205059, rs137853119, rs137853120, rs137853121, rs1384933966
View all (89 more)
Burkitt`s lymphoma Burkitt Lymphoma, Burkitt Leukemia rs28933407, rs121918683, rs121918684 23143597
Glutamate formiminotransferase deficiency Glutamate formiminotransferase deficiency rs398124234, rs149266909, rs374724805, rs8133955, rs775788856, rs140217223 12815595, 29178637, 25689098, 26633545
Age-related macular degeneration Age related macular degeneration rs199474657, rs61750120, rs1800728, rs62654397, rs61749423, rs61751412, rs61749439, rs61751398, rs61752417, rs62645946, rs1801269, rs62646860, rs61750142, rs61750145, rs61750152
View all (20 more)
31120506
Unknown
Disease term Disease name Evidence References Source
Mastocytosis Mastocytosis GWAS
Associations from Text Mining
Disease Name Relationship Type References
Burkitt Lymphoma Associate 23143597
Carcinoma Hepatocellular Associate 17627933, 33380233, 34743578, 35286894, 37248957, 40179431
Carcinoma Hepatocellular Inhibit 31203308
Cholangiocarcinoma Associate 34320944
Chromosome 21 monosomy Associate 35361402
Chromosome 21 ring Associate 35361402
Drug Related Side Effects and Adverse Reactions Associate 30893314
Genetic Diseases Inborn Associate 31759545
Glutamate formiminotransferase deficiency Associate 29178637
Hepatitis Autoimmune Associate 29995946