Gene Details | GeDiPNet - Complete Gene Info, Disease Associations & Pathways

Gene Gene information from NCBI Gene database. Gene SNPs miRNA Gene ontology Other IDs Protein Associated diseases
Entrez ID	10736
Gene name	SIX homeobox 2
Gene symbol	SIX2
Synonyms (NCBI Gene)	-
Chromosome	2
Chromosome location	2p21
Summary	This gene is a member of the vertebrate gene family which encode proteins homologous to the Drosophila `sine oculis` homeobox protein. The encoded protein is a transcription factor which, like other members of this gene family, may be involved in limb or

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SNP ID	Visualize variation	Clinical significance	Consequence
rs756635283	C>A,T	Likely-pathogenic	Missense variant, coding sequence variant

Show/Hide all (15)

miRTarBase ID	miRNA	Experiments	Reference
MIRT438371	hsa-miR-181b-5p	Luciferase reporter assayqRT-PCRWestern blot	24055707
MIRT438371	hsa-miR-181b-5p	Luciferase reporter assayqRT-PCRWestern blot	24055707
MIRT438371	hsa-miR-181b-5p	Luciferase reporter assayqRT-PCRWestern blot	24055707
MIRT438371	hsa-miR-181b-5p	Luciferase reporter assayqRT-PCRWestern blot	24055707
MIRT1350379	hsa-miR-185	CLIP-seq
MIRT1350380	hsa-miR-4306	CLIP-seq
MIRT1350381	hsa-miR-4419a	CLIP-seq
MIRT1350382	hsa-miR-4510	CLIP-seq
MIRT1350383	hsa-miR-4644	CLIP-seq
MIRT2103832	hsa-miR-3150b-3p	CLIP-seq
MIRT2103833	hsa-miR-4433	CLIP-seq
MIRT2103834	hsa-miR-4459	CLIP-seq
MIRT2103835	hsa-miR-4768-3p	CLIP-seq
MIRT2103836	hsa-miR-4784	CLIP-seq
MIRT2103837	hsa-miR-765	CLIP-seq

Show/Hide all (61)

GO ID	Ontology	Definition	Evidence	Reference
GO:0000785	Component	Chromatin	ISA
GO:0000978	Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	IBA
GO:0000978	Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	IEA
GO:0000981	Function	DNA-binding transcription factor activity, RNA polymerase II-specific	IBA
GO:0000981	Function	DNA-binding transcription factor activity, RNA polymerase II-specific	IEA
GO:0000981	Function	DNA-binding transcription factor activity, RNA polymerase II-specific	ISA
GO:0001228	Function	DNA-binding transcription activator activity, RNA polymerase II-specific	IEA
GO:0001656	Process	Metanephros development	IEA
GO:0001822	Process	Kidney development	IBA
GO:0001822	Process	Kidney development	IEA
GO:0001822	Process	Kidney development	IMP	18305125
GO:0001822	Process	Kidney development	ISS
GO:0002062	Process	Chondrocyte differentiation	IEA
GO:0003337	Process	Mesenchymal to epithelial transition involved in metanephros morphogenesis	IEA
GO:0003337	Process	Mesenchymal to epithelial transition involved in metanephros morphogenesis	ISS
GO:0003677	Function	DNA binding	IEA
GO:0003700	Function	DNA-binding transcription factor activity	IEA
GO:0003700	Function	DNA-binding transcription factor activity	NAS	10773454
GO:0005515	Function	Protein binding	IPI	30894749, 32296183
GO:0005634	Component	Nucleus	IBA
GO:0005634	Component	Nucleus	IEA
GO:0005667	Component	Transcription regulator complex	IBA
GO:0006355	Process	Regulation of DNA-templated transcription	IEA
GO:0006357	Process	Regulation of transcription by RNA polymerase II	IBA
GO:0006606	Process	Protein import into nucleus	IEA
GO:0007501	Process	Mesodermal cell fate specification	IEA
GO:0007501	Process	Mesodermal cell fate specification	ISS
GO:0008283	Process	Cell population proliferation	IDA	22995329
GO:0008283	Process	Cell population proliferation	IEA
GO:0009653	Process	Anatomical structure morphogenesis	TAS	10773454
GO:0009948	Process	Anterior/posterior axis specification	IEA
GO:0009948	Process	Anterior/posterior axis specification	ISS
GO:0016477	Process	Cell migration	IDA	22995329
GO:0030278	Process	Regulation of ossification	IEA
GO:0030855	Process	Epithelial cell differentiation	IEA
GO:0030857	Process	Negative regulation of epithelial cell differentiation	IEA
GO:0032330	Process	Regulation of chondrocyte differentiation	IEA
GO:0042474	Process	Middle ear morphogenesis	IEA
GO:0043565	Function	Sequence-specific DNA binding	IEA
GO:0044877	Function	Protein-containing complex binding	IEA
GO:0045944	Process	Positive regulation of transcription by RNA polymerase II	IEA
GO:0048557	Process	Embryonic digestive tract morphogenesis	IEA
GO:0048557	Process	Embryonic digestive tract morphogenesis	ISS
GO:0048701	Process	Embryonic cranial skeleton morphogenesis	IEA
GO:0048704	Process	Embryonic skeletal system morphogenesis	IEA
GO:0072006	Process	Nephron development	IEA
GO:0072006	Process	Nephron development	ISS
GO:0072028	Process	Nephron morphogenesis	IEA
GO:0072028	Process	Nephron morphogenesis	ISS
GO:0072038	Process	Mesenchymal stem cell maintenance involved in nephron morphogenesis	IEA
GO:0072038	Process	Mesenchymal stem cell maintenance involved in nephron morphogenesis	ISS
GO:0072137	Process	Condensed mesenchymal cell proliferation	IEA
GO:0072161	Process	Mesenchymal cell differentiation involved in kidney development	IEA
GO:0072161	Process	Mesenchymal cell differentiation involved in kidney development	ISS
GO:0090189	Process	Regulation of branching involved in ureteric bud morphogenesis	IEA
GO:0090189	Process	Regulation of branching involved in ureteric bud morphogenesis	ISS
GO:0097168	Process	Mesenchymal stem cell proliferation	IEA
GO:0097168	Process	Mesenchymal stem cell proliferation	ISS
GO:1902732	Process	Positive regulation of chondrocyte proliferation	IEA
GO:1902732	Process	Positive regulation of chondrocyte proliferation	ISS
GO:1990837	Function	Sequence-specific double-stranded DNA binding	IDA	28473536

MIM	HGNC	e!Ensembl
604994	10888	ENSG00000170577

Q9NPC8

Protein name

Homeobox protein SIX2 (Sine oculis homeobox homolog 2)

Protein function

Transcription factor that plays an important role in the development of several organs, including kidney, skull and stomach. During kidney development, maintains cap mesenchyme multipotent nephron progenitor cells in an undifferentiated state by

Family and domains

Pfam

Accession	ID	Position in sequence	Description	Type
PF16878	SIX1_SD	9 → 119	Transcriptional regulator, SIX1, N-terminal SD domain	Domain
PF00046	Homeodomain	127 → 181	Homeodomain	Domain

Tissue specificity

TISSUE SPECIFICITY: Strongly expressed in skeletal muscle. Expressed in Wilms' tumor and in the cap mesenchyme of fetal kidney (at protein level). {ECO:0000269|PubMed:22703800}.

Sequence

MSMLPTFGFTQEQVACVCEVLQQGGNIERLGRFLWSLPACEHLHKNESVLKAKAVVAFHR
GNFRELYKILESHQFSPHNHAKLQQLWLKAHYIEAEKLRGRPLGAVGKYRVRRKFPLPRS
IWDGEETSYCFKEKSRSVLREWYAHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDR
AAEAKERENNENSNSNSHNPLNGSGKSVLGSSEDEKTPSGTPDHSSSSPALLLSPPPPGL
PSLHSLGHPPGPSAVPVPVPGGGGADPLQHHHGLQDSILNPMSANLVDLGS

Sequence length

291

Interactions

View interactions

Show/Hide Unknown Diseases (2)

Phenotype Name	Clinical Significance	dbSNP ID	RCV Accession
Unknown Diseases with uncertain, conflicting, or no pathogenic evidence in ClinVar
Congenital anomaly of kidney and urinary tract	Uncertain significance	rs372153489	RCV000416570
SIX2-related disorder	Likely benign; Uncertain significance; Benign	rs150988696, rs142758861, rs372153489, rs143323460, rs753952589, rs770200234, rs755177564, rs2466632092, rs775188449, rs1036544667, rs778544715, rs766486968, rs1572648156	RCV003958593 RCV004750276 RCV003907779 RCV003392778 RCV003420740 RCV003408500 RCV003919701 RCV003894364 RCV003894488 RCV003904774 RCV003952023 RCV003919505 RCV003979236

Show/Hide Text Mining Associations (18)

Disease Name	Relationship Type	References
Associations from Text MiningDisease associations identified through Pubtator
Breast Neoplasms	Associate	31420918
Cakut	Associate	24429398, 37499630
Carcinoma Hepatocellular	Associate	27212161
Carcinoma Renal Cell	Associate	31420918, 34051738
Colorectal Neoplasms	Associate	34526059
Diabetes Mellitus	Associate	33446570
Diabetes Mellitus Type 2	Associate	29621232, 33893274
Hearing Loss Conductive	Associate	27383657
Holoprosencephaly	Associate	20531442
Hyperglycemia	Associate	27133132
Kidney Diseases	Associate	35341793
Kidney Failure Chronic	Associate	27101813
Neoplasms	Associate	25670082, 25670083, 25921281, 37114795, 37815464
Oculocerebrorenal Syndrome	Associate	29444177
Ptosis Hereditary Congenital 2	Associate	27383657
Squamous Cell Carcinoma of Head and Neck	Associate	24519855
Thyroid Neoplasms	Associate	32631391
Wilms Tumor	Associate	22703800, 25670082, 25670083, 25921281, 26802027, 28825729, 30155617, 37114795

SIX2 (SIX homeobox 2)