Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
10559
Gene name Gene Name - the full gene name approved by the HGNC.
Solute carrier family 35 member A1
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
SLC35A1
Synonyms (NCBI Gene) Gene synonyms aliases
CDG2F, CMPST, CST, hCST
Disease Acronyms (UniProt) Disease acronyms from UniProt database
CDG2F
Chromosome Chromosome number
6
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
6q15
Summary Summary of gene provided in NCBI Entrez Gene.
The protein encoded by this gene is found in the membrane of the Golgi apparatus, where it transports nucleotide sugars into the Golgi. One such nucleotide sugar is CMP-sialic acid, which is imported into the Golgi by the encoded protein and subsequently
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs10638303 ->CTCA Risk-factor Intron variant
rs145006535 A>C,G Uncertain-significance, conflicting-interpretations-of-pathogenicity Coding sequence variant, missense variant
rs149903512 G>A,C,T Benign, conflicting-interpretations-of-pathogenicity Coding sequence variant, missense variant
rs578205635 C>G,T Pathogenic Missense variant, coding sequence variant
rs1554164712 T>C Pathogenic Coding sequence variant, synonymous variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT000906 hsa-miR-15a-5p Microarray 18362358
MIRT000905 hsa-miR-16-5p Microarray 18362358
MIRT219500 hsa-miR-224-3p PAR-CLIP 22291592
MIRT219502 hsa-miR-522-3p PAR-CLIP 22291592
MIRT449699 hsa-miR-5700 PAR-CLIP 22291592
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0000139 Component Golgi membrane TAS
GO:0005456 Function CMP-N-acetylneuraminate transmembrane transporter activity ISS
GO:0005456 Function CMP-N-acetylneuraminate transmembrane transporter activity TAS
GO:0005459 Function UDP-galactose transmembrane transporter activity IBA 21873635
GO:0005515 Function Protein binding IPI 32296183
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
605634 11021 ENSG00000164414
Protein
UniProt ID P78382
Protein name CMP-sialic acid transporter (CMP-SA-Tr) (CMP-Sia-Tr) (CST) (Solute carrier family 35 member A1)
Protein function Transports CMP-sialic acid from the cytosol into the Golgi apparatus, functioning as an antiporter that exchanges CMP-sialic acid for CMP (PubMed:12682060, PubMed:15576474, PubMed:23873973). Binds both CMP-sialic acid and free CMP, but has highe
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF04142 Nuc_sug_transp 8 314 Nucleotide-sugar transporter Family
Sequence
Sequence length 337
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  Reactome
    Sialic acid metabolism
Defective SLC35A1 causes congenital disorder of glycosylation 2F (CDG2F)
Defective SLC35A1 causes congenital disorder of glycosylation 2F (CDG2F)
Transport of nucleotide sugars
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Congenital disorder of glycosylation Congenital Disorders of Glycosylation, Congenital Disorder Of Glycosylation, Type IIF, Congenital disorder of glycosylation type 1q, SLC35A1-CDG rs121434387, rs1264383808, rs766244312, rs1555497568, rs1555496968, rs267606740, rs1568296260, rs1562937199, rs28939378, rs121908583, rs1568757730, rs28936415, rs587776874, rs387906831, rs151173406
View all (80 more)
25552652, 30115659, 28856833, 15576474
Developmental delay Global developmental delay rs28941770, rs199469464, rs281865469, rs143747297, rs398123009, rs587777428, rs786205133, rs606231459, rs797044854, rs797045027, rs864309504, rs878853160, rs886039902, rs886042046, rs886041291
View all (32 more)
Epileptic encephalopathy Encephalopathies rs587776508, rs121918334, rs121918317, rs121918321, rs74315390, rs28939684, rs74315391, rs74315392, rs118192244, rs121918622, rs121918623, rs121917953, rs121917955, rs121918624, rs121918625
View all (860 more)
Macrothrombocytopenia Macrothrombocytopenia rs121908063, rs5030764, rs121918037, rs80338835, rs80338834, rs80338829, rs121913655, rs80338831, rs121913656, rs80338826, rs80338828, rs587776808, rs80338827, rs121913657, rs876661302
View all (32 more)
30115659
Associations from Text Mining
Disease Name Relationship Type References
Colitis Ulcerative Associate 36746519
Congenital Disorders of Glycosylation Associate 32303557, 33396746
Glycogen Storage Disease XIV Associate 32303557
Infections Associate 31320712
Thrombocytopenia Associate 32303557
Thyroid Cancer Papillary Associate 34590520