Gene Gene information from NCBI Gene database.
Entrez ID 10529
Gene name Nebulette
Gene symbol NEBL
Synonyms (NCBI Gene)
C10orf113LASP2LNEBLbA165O3.1
Chromosome 10
Chromosome location 10p12.31
Summary This gene encodes a nebulin like protein that is abundantly expressed in cardiac muscle. The encoded protein binds actin and interacts with thin filaments and Z-line associated proteins in striated muscle. This protein may be involved in cardiac myofibril
SNPs SNP information provided by dbSNP.
9
SNP ID Visualize variation Clinical significance Consequence
rs114875104 G>A Uncertain-significance, conflicting-interpretations-of-pathogenicity Coding sequence variant, missense variant, non coding transcript variant, intron variant
rs146275785 G>A,C,T Uncertain-significance, conflicting-interpretations-of-pathogenicity, likely-benign Coding sequence variant, missense variant, non coding transcript variant, intron variant
rs151035799 C>T Conflicting-interpretations-of-pathogenicity Coding sequence variant, missense variant, non coding transcript variant, intron variant
rs193163659 A>G Conflicting-interpretations-of-pathogenicity, likely-benign Genic downstream transcript variant, splice donor variant, downstream transcript variant, intron variant
rs200249470 C>T Conflicting-interpretations-of-pathogenicity, uncertain-significance Intron variant
miRNA miRNA information provided by mirtarbase database.
298
miRTarBase ID miRNA Experiments Reference
MIRT046090 hsa-miR-125b-5p CLASH 23622248
MIRT722021 hsa-miR-140-3p HITS-CLIP 19536157
MIRT722020 hsa-miR-4301 HITS-CLIP 19536157
MIRT722019 hsa-miR-3162-3p HITS-CLIP 19536157
MIRT722018 hsa-miR-324-5p HITS-CLIP 19536157
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
19
GO ID Ontology Definition Evidence Reference
GO:0001725 Component Stress fiber IDA 10470015
GO:0003779 Function Actin binding IEA
GO:0005515 Function Protein binding IPI 11309420, 17987659, 23985323, 25416956, 26871637, 27733623, 31515488, 32296183, 32814053
GO:0005523 Function Tropomyosin binding IPI 17987659
GO:0005737 Component Cytoplasm IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
605491 16932 ENSG00000078114
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
O76041
Protein name Nebulette (Actin-binding Z-disk protein)
Protein function Binds to actin and plays an important role in the assembly of the Z-disk. May functionally link sarcomeric actin to the desmin intermediate filaments in the heart muscle sarcomeres (PubMed:27733623). ; [Is
PDB 4F14
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00880 Nebulin 35 62 Nebulin repeat Repeat
PF00880 Nebulin 213 240 Nebulin repeat Repeat
PF00880 Nebulin 320 347 Nebulin repeat Repeat
PF00880 Nebulin 356 384 Nebulin repeat Repeat
PF00880 Nebulin 432 456 Nebulin repeat Repeat
PF00880 Nebulin 467 493 Nebulin repeat Repeat
PF00880 Nebulin 504 532 Nebulin repeat Repeat
PF00880 Nebulin 541 568 Nebulin repeat Repeat
PF00880 Nebulin 576 599 Nebulin repeat Repeat
PF00880 Nebulin 607 629 Nebulin repeat Repeat
PF00880 Nebulin 638 663 Nebulin repeat Repeat
PF00880 Nebulin 669 693 Nebulin repeat Repeat
PF00880 Nebulin 732 758 Nebulin repeat Repeat
PF00880 Nebulin 766 793 Nebulin repeat Repeat
PF14604 SH3_9 961 1011 Variant SH3 domain Domain
Tissue specificity TISSUE SPECIFICITY: Abundantly expressed in cardiac muscle, but not in skeletal or smooth muscle. Localized to Z-lines in cardiac cells and to dense bodies in nonmuscle cells. Isoform 2 is expressed in non-muscle cells such as in fibroblasts.
Sequence
MRVPVFEDIKDETEEEKIGEEENEEDQVFYKPVIEDLSMELARKCTELISDIRYKEEFKK
SK
DKCTFVTDSPMLNHVKNIGAFISEAKYKGTIKADLSNSLYKRMPATIDSVFAGEVTQL
QSEVAYKQKHDAAKGFSDYAHMKEPPEVKHAMEVNKHQSNISYRKDVQDTHTYSAELDRP
DIKMATQISKIISNAEYKKGQGIMNKEPAVIGRPDFEHAVEASKLSSQIKYKEKFDNEMK
DKKHHYNPLESASFRQNQLAATLASNVKYKKDIQNMHDPVSDLPNLLFLDHVLKASKMLS
GREYKKLFEENKGMYHFDADAVEHLHHKGNAVLQSQVKYKEEYEKNKGKPMLEFVETPSY
QASKEAQKMQSEKVYKEDFEKEIK
GRSSLDLDKTPEFLHVKYITNLLREKEYKKDLENEI
KGKGMELNSEVLDIQRAKRASEMASEKEYKKDLESIIKGKGMQAGTDTLEMQHAKKAAEI
ASEKDYKRDLETE
IKGKGMQVSTDTLDVQRAKKASEMASQKQYKKDLENEIKGKGMQVSM
DIPDILRAKRTSEIYSQRKYKDEAEKMLSNYSTIADTPEIQRIKTTQQNISAVFYKKEVG
AGTAVKDSPEIERVKKNQQNISSVKYKEEIKHATAISDPPELKRVKENQKNISNLQYKEQ
NYK
ATPVSMTPEIERVRRNQEQLSAVKYKGELQRGTAISDPPELKRAKENQKNISNVYYR
GQLGRATTLSVTPEMERVKKNQENISSVKYTQDHKQMKGRPSLILDTPAMRHVKEAQNHI
SMVKYHEDFEKTK
GRGFTPVVDDPVTERVRKNTQVVSDAAYKGVHPHIVEMDRRPGIIVD
LKVWRTDPGSIFDLDPLEDNIQSRSLHMLSEKASHYRRHWSRSHSSSTFGTGLGDDRSEI
SEIYPSFSCCSEVTRPSDEGAPVLPGAYQQSHSQGYGYMHQTSVSSMRSMQHSPNLRTYR
AMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYIEFVN
Sequence length 1014
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG 
  Cytoskeleton in muscle cells  
Associated diseases Disease associations from ClinVar categorized as Causal (Pathogenic/Likely Pathogenic) or Unknown.
944
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Primary dilated cardiomyopathy Likely pathogenic rs768079285 RCV000850234
Unknown Diseases with uncertain, conflicting, or no pathogenic evidence in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Cardiac arrest Uncertain significance rs370153729 RCV005054246
Cardiomyopathy Uncertain significance rs730880171, rs794729080 RCV000157389
RCV000183632
Cardiovascular phenotype Benign; Conflicting classifications of pathogenicity; Uncertain significance; Likely benign rs71578956, rs368268112, rs780384504, rs773469997, rs1373986579, rs548922223, rs4025981, rs41277370, rs146275785, rs41277374, rs71535732, rs71578983, rs2296610 RCV000617843
RCV000619343
RCV000620613
RCV000620189
RCV000619425
RCV000618825
RCV000621023
RCV000620002
RCV000619089
RCV000620464
RCV000621280
RCV000621845
RCV000621797
Cervical cancer Benign; Likely benign rs41277376, rs2296608, rs61146312 RCV005890018
RCV005902352
RCV005906851
Associations from Text MiningDisease associations identified through Pubtator
Disease Name Relationship Type References
Adenocarcinoma Associate 35854639
Arrhythmias Cardiac Associate 32233023
Brugada Syndrome Associate 36303204
Carcinoma Basal Cell Associate 23774526
Carcinoma Hepatocellular Inhibit 32325347
Cardiomyopathies Associate 28815794, 32233023
Colonic Neoplasms Associate 36181111
Colorectal Neoplasms Inhibit 28606091
Colorectal Neoplasms Associate 29257257, 37158531
Conversion Disorder Associate 34371182