Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
1051
Gene name Gene Name - the full gene name approved by the HGNC.
CCAAT enhancer binding protein beta
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
CEBPB
Synonyms (NCBI Gene) Gene synonyms aliases
C/EBP-beta, IL6DBP, NF-IL6, TCF5
Chromosome Chromosome number
20
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
20q13.13
Summary Summary of gene provided in NCBI Entrez Gene.
This intronless gene encodes a transcription factor that contains a basic leucine zipper (bZIP) domain. The encoded protein functions as a homodimer but can also form heterodimers with CCAAT/enhancer-binding proteins alpha, delta, and gamma. Activity of t
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT001560 hsa-miR-155-5p Luciferase reporter assay 18367535
MIRT001560 hsa-miR-155-5p Review 20029422
MIRT001560 hsa-miR-155-5p Luciferase reporter assay, qRT-PCR, Western blot 20427544
MIRT001560 hsa-miR-155-5p pSILAC 18668040
MIRT001560 hsa-miR-155-5p Microarray, qRT-PCR, Western blot 19193853
Transcription factors
Transcription factor Regulation Reference
ATF4 Activation 16026328
ESR1 Unknown 19652226
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0000122 Process Negative regulation of transcription by RNA polymerase II IEA
GO:0000122 Process Negative regulation of transcription by RNA polymerase II ISS 15308669
GO:0000779 Component Condensed chromosome, centromeric region IEA
GO:0000785 Component Chromatin IEA
GO:0000785 Component Chromatin ISA
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
189965 1834 ENSG00000172216
Protein
UniProt ID P17676
Protein name CCAAT/enhancer-binding protein beta (C/EBP beta) (Liver activator protein) (LAP) (Liver-enriched inhibitory protein) (LIP) (Nuclear factor NF-IL6) (Transcription factor 5) (TCF-5)
Protein function Important transcription factor regulating the expression of genes involved in immune and inflammatory responses (PubMed:12048245, PubMed:1741402, PubMed:18647749, PubMed:9374525). Also plays a significant role in adipogenesis, as well as in the
PDB 1GTW , 1GU4 , 1GU5 , 1H88 , 1H89 , 1H8A , 1HJB , 1IO4 , 2E42 , 2E43 , 6MG1 , 6MG2 , 6MG3 , 7L4V , 7UPZ , 8K8D
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF07716 bZIP_2 270 323 Basic region leucine zipper Coiled-coil
Tissue specificity TISSUE SPECIFICITY: Expressed at low levels in the lung, kidney and spleen.
Sequence
MQRLVAWDPACLPLPPPPPAFKSMEVANFYYEADCLAAAYGGKAAPAAPPAARPGPRPPA
GELGSIGDHERAIDFSPYLEPLGAPQAPAPATATDTFEAAPPAPAPAPASSGQHHDFLSD
LFSDDYGGKNCKKPAEYGYVSLGRLGAAKGALHPGCFAPLHPPPPPPPPPAELKAEPGFE
PADCKRKEEAGAPGGGAGMAAGFPYALRAYLGYQAVPSGSSGSLSTSSSSSPPGTPSPAD
AKAPPTACYAGAAPAPSQVKSKAKKTVDKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQ
HKVLELTAENERLQKKVEQLSRE
LSTLRNLFKQLPEPLLASSGHC
Sequence length 345
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  Efferocytosis
IL-17 signaling pathway
TNF signaling pathway
Tuberculosis
Transcriptional misregulation in cancer
  Senescence-Associated Secretory Phenotype (SASP)
Transcriptional regulation of white adipocyte differentiation
Transcriptional Regulation by VENTX
Response of EIF2AK4 (GCN2) to amino acid deficiency
Response of EIF2AK1 (HRI) to heme deficiency
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Associated diseases Disease associations categorized as Causal (pathogenic variants), Unknown (uncertain genetic evidence), or Text Mining (literature-based associations)
Unknown Includes: (1) ClinVar NON-pathogenic variants (Uncertain, Benign, Conflicting, VUS), (2) GenCC associations, (3) GWAS associations, (4) CBGDA evidence-based associations. NOTE: Diseases with pathogenic evidence are excluded to avoid conflicts.
Disease merge term Disease name Evidence References Source
Colorectal Cancer Colorectal cancer N/A N/A GWAS
Diabetes Type 2 diabetes N/A N/A GWAS
Associations from Text Mining Disease associations identified through Pubtator
Disease Name Relationship Type References
Adenomyosis Associate 31576674
AIDS Associated Nephropathy Stimulate 32276639
Alzheimer Disease Associate 21281310, 22818222
Anti Neutrophil Cytoplasmic Antibody Associated Vasculitis Associate 22403660
Arthritis Associate 19248099, 21917825
Arthritis Psoriatic Associate 21917825
Arthritis Rheumatoid Stimulate 10902764, 25811130
Arthritis Rheumatoid Associate 30231487, 30894209
Astrocytoma Associate 22818222
Atrophy Stimulate 34854237