Gene Gene information from NCBI Gene database.
Entrez ID 10483
Gene name SEC23 homolog B, COPII component
Gene symbol SEC23B
Synonyms (NCBI Gene)
CDA-IICDAIICDAN2CWS7HEMPAShSec23B
Chromosome 20
Chromosome location 20p11.23
Summary The protein encoded by this gene is a member of the SEC23 subfamily of the SEC23/SEC24 family, which is involved in vesicle trafficking. The encoded protein has similarity to yeast Sec23p component of COPII. COPII is the coat protein complex responsible f
SNPs SNP information provided by dbSNP.
23
SNP ID Visualize variation Clinical significance Consequence
rs6045440 C>A,T Conflicting-interpretations-of-pathogenicity, uncertain-significance Missense variant, coding sequence variant
rs121918221 G>A Pathogenic Coding sequence variant, missense variant
rs121918222 C>T Pathogenic Coding sequence variant, missense variant
rs121918223 C>T Pathogenic Coding sequence variant, missense variant
rs121918224 C>T Pathogenic Stop gained, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
176
miRTarBase ID miRNA Experiments Reference
MIRT020211 hsa-miR-130b-3p Sequencing 20371350
MIRT024934 hsa-miR-215-5p Microarray 19074876
MIRT026508 hsa-miR-192-5p Microarray 19074876
MIRT031137 hsa-miR-19b-3p Sequencing 20371350
MIRT032362 hsa-let-7b-5p Proteomics 18668040
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
24
GO ID Ontology Definition Evidence Reference
GO:0005096 Function GTPase activator activity IBA
GO:0005515 Function Protein binding IPI 16189514, 21516116, 25416956, 26522472, 27551091, 31515488, 32296183, 32814053, 33961781, 35271311
GO:0005737 Component Cytoplasm IEA
GO:0005783 Component Endoplasmic reticulum IDA 26522472
GO:0005783 Component Endoplasmic reticulum IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
610512 10702 ENSG00000101310
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q15437
Protein name Protein transport protein Sec23B (hSec23B) (SEC23-related protein B)
Protein function Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicle
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF04810 zf-Sec23_Sec24 58 98 Sec23/Sec24 zinc finger Domain
PF04811 Sec23_trunk 126 392 Sec23/Sec24 trunk domain Domain
PF08033 Sec23_BS 403 506 Sec23/Sec24 beta-sandwich domain Domain
PF04815 Sec23_helical 520 619 Sec23/Sec24 helical domain Domain
PF00626 Gelsolin 631 720 Gelsolin repeat Domain
Tissue specificity TISSUE SPECIFICITY: Ubiquitously expressed. {ECO:0000269|PubMed:8898360}.
Sequence
Sequence length 767
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG 
  Protein processing in endoplasmic reticulum  
Associated diseases Disease associations from ClinVar categorized as Causal (Pathogenic/Likely Pathogenic) or Unknown.
1142
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Cervical cancer Pathogenic rs2517508341 RCV005934906
Congenital dyserythropoietic anemia, type II Likely pathogenic; Pathogenic rs398124225, rs398124226, rs201921350, rs201270568, rs121918221, rs121918222, rs121918224, rs121918225, rs121918226, rs775380378, rs905074313, rs755624074, rs199939108, rs727504145, rs201418257
View all (49 more)
RCV001843475
RCV001195899
RCV001894286
RCV002020875
RCV000001281
RCV000001282
RCV000001284
RCV000001285
RCV000001286
RCV002250341
RCV003101567
RCV002283821
RCV002514962
RCV000779341
RCV002470657
RCV003061637
RCV002634283
RCV002775182
RCV002862093
RCV003778725
RCV003785505
RCV003785574
RCV003785683
RCV003783740
RCV003783741
RCV003783742
RCV003783743
RCV003783744
RCV003783745
RCV003783746
RCV003783747
RCV003798019
RCV003782914
RCV003782928
RCV003780932
RCV003789933
RCV003780267
RCV003787891
RCV003788065
RCV003793972
RCV003794662
RCV003808202
RCV003806710
RCV003791045
RCV003799994
RCV003805918
RCV003800591
RCV003803590
RCV003794769
RCV003800648
RCV003808831
RCV003809211
RCV003802284
RCV003809999
RCV003807432
RCV003810541
RCV003805175
RCV003818120
RCV000540391
RCV000638849
RCV000691489
RCV000703264
RCV000779340
RCV001873183
RCV005213426
RCV001003811
Cowden syndrome 7 Likely pathogenic; Pathogenic rs398124225, rs398124226, rs201921350, rs201270568, rs121918221, rs121918222, rs121918224, rs121918225, rs121918226, rs775380378, rs905074313, rs199939108, rs727504145, rs201418257, rs776983439
View all (47 more)
RCV003764767
RCV000689848
RCV001894286
RCV002020875
RCV000688348
RCV000688744
RCV001384733
RCV002512638
RCV002496226
RCV002481053
RCV003101567
RCV002514962
RCV001850108
RCV003775526
RCV003061637
RCV002634283
RCV002775182
RCV002862093
RCV003778725
RCV003785505
RCV003785574
RCV003785683
RCV003783740
RCV003783741
RCV003783742
RCV003783743
RCV003783744
RCV003783745
RCV003783746
RCV003783747
RCV003798019
RCV003782914
RCV003782928
RCV003780932
RCV003789933
RCV003780267
RCV003787891
RCV003788065
RCV003793972
RCV003794662
RCV003808202
RCV003806710
RCV003791045
RCV003799994
RCV003805918
RCV003800591
RCV003803590
RCV003794769
RCV003800648
RCV003808831
RCV003809211
RCV003802284
RCV003809999
RCV003807432
RCV003810541
RCV003805175
RCV003818120
RCV003766993
RCV000638849
RCV000691489
RCV000703264
RCV003768444
RCV001873183
RCV005213426
SEC23B-related disorder Likely pathogenic; Pathogenic rs201270568, rs121918221, rs121918222, rs199939108, rs727504145 RCV002222748
RCV004547453
RCV004724725
RCV004737239
RCV004737238
Unknown Diseases with uncertain, conflicting, or no pathogenic evidence in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Acute myeloid leukemia Likely benign rs573898514 RCV005934937
Congenital dyserythropoietic anemia Benign; Likely benign; Uncertain significance; Conflicting classifications of pathogenicity rs142180765, rs561908920, rs138178711, rs397793825, rs886056522, rs113396443, rs886056523, rs886056524, rs373348732, rs191103191, rs57738665, rs886056521, rs4813333, rs1600244935 RCV000368332
RCV000288232
RCV000349063
RCV000314865
RCV000388487
RCV000390269
RCV000398634
RCV000281152
RCV000338718
RCV000299012
RCV000389743
RCV000326870
RCV000296537
RCV000825546
Familial cancer of breast Benign rs3736775, rs4813334, rs6136406, rs1555354 RCV005886523
RCV005923327
RCV005924839
RCV005922187
Gastric cancer Benign rs4813334 RCV005923329
Associations from Text MiningDisease associations identified through Pubtator
Disease Name Relationship Type References
Anemia Associate 29893852
Anemia Dyserythropoietic Congenital Associate 10519996, 20015893, 20941788, 21850656, 22208203, 23453696, 24801240, 27471141, 27784127, 29300242, 31400017, 32759740, 35163229, 35820731, 37373084
View all (2 more)
Anemia Hemolytic Associate 35820731
Breast Neoplasms Associate 33176066
Carcinogenesis Associate 29893852
Colorectal Neoplasms Associate 32123160
Colorectal Neoplasms Inhibit 32123160
Gaucher Disease Associate 24801240
Hematologic Diseases Associate 32098966
Hepatitis B Associate 30065114