Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
10483
Gene name Gene Name - the full gene name approved by the HGNC.
SEC23 homolog B, COPII component
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
SEC23B
Synonyms (NCBI Gene) Gene synonyms aliases
CDA-II, CDAII, CDAN2, CWS7, HEMPAS, hSec23B
Disease Acronyms (UniProt) Disease acronyms from UniProt database
CDAN2, CWS7
Chromosome Chromosome number
20
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
20p11.23
Summary Summary of gene provided in NCBI Entrez Gene.
The protein encoded by this gene is a member of the SEC23 subfamily of the SEC23/SEC24 family, which is involved in vesicle trafficking. The encoded protein has similarity to yeast Sec23p component of COPII. COPII is the coat protein complex responsible f
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs6045440 C>A,T Conflicting-interpretations-of-pathogenicity, uncertain-significance Missense variant, coding sequence variant
rs121918221 G>A Pathogenic Coding sequence variant, missense variant
rs121918222 C>T Pathogenic Coding sequence variant, missense variant
rs121918223 C>T Pathogenic Coding sequence variant, missense variant
rs121918224 C>T Pathogenic Stop gained, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT020211 hsa-miR-130b-3p Sequencing 20371350
MIRT024934 hsa-miR-215-5p Microarray 19074876
MIRT026508 hsa-miR-192-5p Microarray 19074876
MIRT031137 hsa-miR-19b-3p Sequencing 20371350
MIRT032362 hsa-let-7b-5p Proteomics 18668040
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0000139 Component Golgi membrane IEA
GO:0005096 Function GTPase activator activity IBA 21873635
GO:0005515 Function Protein binding IPI 16189514, 21516116, 25416956, 26522472, 27551091, 31515488, 32296183, 32814053
GO:0005783 Component Endoplasmic reticulum IDA 26522472
GO:0005789 Component Endoplasmic reticulum membrane IEA
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
610512 10702 ENSG00000101310
Protein
UniProt ID Q15437
Protein name Protein transport protein Sec23B (hSec23B) (SEC23-related protein B)
Protein function Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicle
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF04810 zf-Sec23_Sec24 58 98 Sec23/Sec24 zinc finger Domain
PF04811 Sec23_trunk 126 392 Sec23/Sec24 trunk domain Domain
PF08033 Sec23_BS 403 506 Sec23/Sec24 beta-sandwich domain Domain
PF04815 Sec23_helical 520 619 Sec23/Sec24 helical domain Domain
PF00626 Gelsolin 631 720 Gelsolin repeat Domain
Tissue specificity TISSUE SPECIFICITY: Ubiquitously expressed. {ECO:0000269|PubMed:8898360}.
Sequence
Sequence length 767
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  
  Protein processing in endoplasmic reticulum  
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Anemia Congenital dyserythropoietic anemia, type III, Anemia of inadequate production rs118204044, rs118204045, rs118204046, rs121918330, rs869320719, rs869312029, rs121918332, rs869320724, rs767094129, rs786205058, rs786205059, rs137853119, rs137853120, rs137853121, rs1384933966
View all (89 more)
19561605
Autism Autistic Disorder rs121964908, rs62643608, rs181327458, rs797046134, rs869312704, rs1555013332, rs876657679, rs1057518999, rs1057518658, rs771827120, rs1555187899, rs773080572, rs753871454, rs1684130791, rs1684180699
View all (8 more)
Brachydactyly Brachydactyly rs121908949, rs28937580, rs121909082, rs104894122, rs863223289, rs863223290, rs104894121, rs1587657302, rs863223292, rs74315386, rs74315387, rs28936397, rs753691079, rs121909348, rs121917852
View all (22 more)
Breast carcinoma Breast Carcinoma rs80359671, rs11540652, rs28934575, rs28897672, rs137886232, rs193922376, rs80357783, rs80359306, rs80359405, rs80359507, rs80359598, rs80358429, rs397507683, rs397515636, rs80359451
View all (71 more)
Unknown
Disease term Disease name Evidence References Source
Hamartoma Hamartoma Syndrome, Multiple 26522472 ClinVar
Cowden Syndrome Cowden syndrome 7 GenCC
Neuroticism Neuroticism GWAS
Glioblastoma Glioblastoma CRISPR screening of E3 ubiquitin ligases reveals Ring Finger Protein 185 as a novel tumor suppressor in glioblastoma repressed by promoter hypermethylation and miR-587 GWAS, CBGDA
Associations from Text Mining
Disease Name Relationship Type References
Anemia Associate 29893852
Anemia Dyserythropoietic Congenital Associate 10519996, 20015893, 20941788, 21850656, 22208203, 23453696, 24801240, 27471141, 27784127, 29300242, 31400017, 32759740, 35163229, 35820731, 37373084
View all (2 more)
Anemia Hemolytic Associate 35820731
Breast Neoplasms Associate 33176066
Carcinogenesis Associate 29893852
Colorectal Neoplasms Associate 32123160
Colorectal Neoplasms Inhibit 32123160
Gaucher Disease Associate 24801240
Hematologic Diseases Associate 32098966
Hepatitis B Associate 30065114