Gene Gene information from NCBI Gene database.
Entrez ID 10481
Gene name Homeobox B13
Gene symbol HOXB13
Synonyms (NCBI Gene)
HPC9PSGD
Chromosome 17
Chromosome location 17q21.32
Summary This gene encodes a transcription factor that belongs to the homeobox gene family. Genes of this family are highly conserved among vertebrates and essential for vertebrate embryonic development. This gene has been implicated to play a role in fetal skin d
SNPs SNP information provided by dbSNP.
2
SNP ID Visualize variation Clinical significance Consequence
rs77179853 A>- Conflicting-interpretations-of-pathogenicity, uncertain-significance Frameshift variant, stop lost, terminator codon variant
rs138213197 C>T Pathogenic, pathogenic-likely-pathogenic, risk-factor, likely-pathogenic Coding sequence variant, missense variant
miRNA miRNA information provided by mirtarbase database.
114
miRTarBase ID miRNA Experiments Reference
MIRT019730 hsa-miR-375 Microarray 20215506
MIRT490314 hsa-miR-1321 PAR-CLIP 23592263
MIRT490312 hsa-miR-4739 PAR-CLIP 23592263
MIRT490311 hsa-miR-4756-5p PAR-CLIP 23592263
MIRT490310 hsa-miR-6732-5p PAR-CLIP 23592263
Transcription factors Transcription factors information provided by TRRUST V2 database.
3
Transcription factor Regulation Reference
EZH2 Repression 22808286
HDAC4 Repression 19013255
YY1 Repression 19013255
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
26
GO ID Ontology Definition Evidence Reference
GO:0000122 Process Negative regulation of transcription by RNA polymerase II IDA 15126340
GO:0000785 Component Chromatin ISA
GO:0000978 Function RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
GO:0000981 Function DNA-binding transcription factor activity, RNA polymerase II-specific IBA
GO:0000981 Function DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
604607 5112 ENSG00000159184
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q92826
Protein name Homeobox protein Hox-B13
Protein function Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. Binds preferentially to methylated DNA (PubMed:28473536). {ECO:0000
PDB 2CRA , 5EDN , 5EEA , 5EF6 , 5EG0 , 5EGO , 5NO6 , 7PSX , 8BYX
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF12284 HoxA13_N 12 123 Hox protein A13 N terminal Family
PF00046 Homeodomain 217 273 Homeodomain Domain
Sequence
MEPGNYATLDGAKDIEGLLGAGGGRNLVAHSPLTSHPAAPTLMPAVNYAPLDLPGSAEPP
KQCHPCPGVPQGTSPAPVPYGYFGGGYYSCRVSRSSLKPCAQAATLAAYPAETPTAGEEY
PSR
PTEFAFYPGYPGTYQPMASYLDVSVVQTLGAPGEPRHDSLLPVDSYQSWALAGGWNS
QMCCQGEQNPPGPFWKAAFADSSGQHPPDACAFRRGRKKRIPYSKGQLRELEREYAANKF
ITKDKRRKISAATSLSERQITIWFQNRRVKEKK
VLAKVKNSATP
Sequence length 284
Interactions View interactions
Associated diseases Disease associations from ClinVar categorized as Causal (Pathogenic/Likely Pathogenic) or Unknown.
2181
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Breast and/or ovarian cancer Likely pathogenic; Pathogenic rs138213197 RCV003492500
Carcinoma of pancreas Likely pathogenic; Pathogenic rs138213197 RCV001391199
Familial prostate cancer Likely pathogenic; Pathogenic rs138213197 RCV001582580
Gastric cancer Pathogenic rs2509512772 RCV003164703
Unknown Diseases with uncertain, conflicting, or no pathogenic evidence in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Prostate cancer Uncertain significance; Conflicting classifications of pathogenicity; Likely benign rs1597933664, rs752322954, rs375857762 RCV005361569
RCV005369878
RCV005361682
Prostate cancer, hereditary, 1 Uncertain significance; Likely benign; Benign; Conflicting classifications of pathogenicity rs1597932009, rs1597932022, rs1597932026, rs1597932037, rs1597932040, rs1597932044, rs1597932046, rs1597932049, rs900423192, rs1597932057, rs1597932061, rs1597932064, rs1597932068, rs1597932075, rs1597932081
View all (672 more)
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RCV000855928
RCV000855926
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RCV000855801
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RCV000855901
RCV000855898
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RCV000855896
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RCV000855879
RCV000855878
RCV000855877
RCV000855876
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RCV000855870
RCV000855871
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RCV000855798
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RCV000855863
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RCV000855797
RCV000855852
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RCV000855796
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RCV000855794
RCV000855842
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RCV000855793
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RCV000855830
RCV000855792
RCV000855829
RCV000855828
RCV000855791
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RCV000855827
RCV000855825
RCV000855790
RCV000855824
RCV000856289
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RCV000856286
RCV000856285
RCV000856284
RCV000856280
RCV000856281
RCV000856279
RCV000856272
RCV000856278
RCV000855822
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RCV000855821
RCV000856274
RCV000856267
RCV000855820
RCV000856266
RCV000856265
RCV000856263
RCV000856261
RCV000856257
RCV000856253
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RCV000856247
RCV000856248
RCV000856245
RCV000856244
RCV000856241
RCV000856240
RCV000856239
RCV000856206
RCV000856236
RCV000856200
RCV000856191
RCV000856177
RCV000856170
RCV000856171
RCV000856163
RCV000856162
RCV000855815
RCV000856141
RCV000856111
RCV000855813
RCV000856080
RCV000856079
RCV000856051
RCV000856050
RCV000855811
RCV000856047
RCV000856043
RCV000856039
RCV000856034
RCV000856024
RCV000856028
RCV000856027
RCV000856011
RCV000856002
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RCV000855991
RCV000855990
RCV000855987
RCV000855986
RCV000855972
RCV000855943
RCV000855933
RCV000855923
RCV000855922
RCV000855915
RCV000855906
RCV000855873
RCV000855872
RCV000855851
RCV000855858
RCV000855850
RCV000855831
RCV000855823
RCV000856282
RCV000856291
RCV000856269
RCV000856205
RCV000856202
RCV000856201
RCV000856113
RCV000855925
RCV000856007
RCV000856006
RCV000856112
RCV000856203
RCV000856204
RCV000856256
RCV000856268
RCV000856270
RCV000856271
RCV000856292
RCV000855840
RCV000855859
RCV000855860
RCV000855874
RCV000855924
RCV000855934
RCV000855944
RCV000855955
RCV000855806
RCV000855964
RCV000855971
RCV000855985
RCV000855810
RCV000856010
RCV000856022
RCV000856023
RCV000856035
RCV000856045
RCV000856044
RCV000856052
RCV000856055
RCV000856064
RCV000856072
RCV000856071
RCV000856070
RCV000855812
RCV000856101
RCV000856100
RCV000856114
RCV000856121
RCV000856129
RCV000856128
RCV000856142
RCV000856152
RCV000856153
RCV000855816
RCV000856164
RCV000856176
RCV000856192
RCV000856237
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RCV000856243
RCV000856246
RCV000856249
RCV000856250
RCV000856255
RCV000856254
RCV000856252
RCV000856258
RCV000856259
RCV000856260
RCV000856262
RCV000856264
RCV000856273
RCV000856276
RCV000856277
RCV000856283
RCV000856287
RCV000856290
RCV000856373
RCV000856368
RCV000856369
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RCV000856375
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RCV000856380
RCV000856379
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RCV000856385
RCV000856384
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RCV000856390
RCV000856391
RCV000856392
RCV000856393
RCV000856395
RCV000856394
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RCV000856538
RCV000856397
RCV000856398
RCV000856399
RCV000856400
RCV000856401
RCV000856402
RCV000856403
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RCV000856405
RCV000856406
RCV000856358
RCV000856535
RCV000856359
RCV000856360
RCV000856536
RCV000856361
RCV000856362
RCV000856537
RCV000856364
RCV000856363
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RCV000856366
RCV000856367
RCV000856233
RCV000856232
RCV000856231
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RCV000856229
RCV000856228
RCV000856227
RCV000856226
RCV000856224
RCV000856223
RCV000856222
RCV000856220
RCV000856219
RCV000856216
RCV000856215
RCV000856214
RCV000856213
RCV000856212
RCV000856211
RCV000856210
RCV000856209
RCV000856208
RCV000856225
RCV000856221
RCV000856218
RCV000856217
Associations from Text MiningDisease associations identified through Pubtator
Disease Name Relationship Type References
Adenocarcinoma Associate 31882852, 34609407
Adenocarcinoma of Lung Associate 31558162
Breast Neoplasms Stimulate 15193263
Breast Neoplasms Associate 18499701, 19250546, 21559019, 21574054, 22293681, 23099437, 23497539, 23812955, 25640367, 26728744, 27424772
Calcinosis Cutis Associate 29716922, 35031163, 36446039
Carcinogenesis Associate 19793339, 25743797, 26108461, 32376288
Carcinoma Basal Cell Associate 32830201
Carcinoma Hepatocellular Associate 25031711
Carcinoma Renal Cell Associate 33619226, 39331921
Colorectal Neoplasms Inhibit 15928669