Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
10466
Gene name Gene Name - the full gene name approved by the HGNC.
Component of oligomeric golgi complex 5
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
COG5
Synonyms (NCBI Gene) Gene synonyms aliases
CDG2I, GOLTC1, GTC90
Chromosome Chromosome number
7
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
7q22.3
Summary Summary of gene provided in NCBI Entrez Gene.
The protein encoded by this gene is one of eight proteins (Cog1-8) which form a Golgi-localized complex (COG) required for normal Golgi morphology and function. The encoded protein is organized with conserved oligomeric Golgi complex components 6, 7 and 8
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs143773937 G>A Conflicting-interpretations-of-pathogenicity, uncertain-significance Coding sequence variant, missense variant
rs149574256 C>G,T Conflicting-interpretations-of-pathogenicity Coding sequence variant, synonymous variant
rs760015202 TTGA>-,TTGATTGA Likely-pathogenic Genic downstream transcript variant, coding sequence variant, frameshift variant
rs773281248 ->G Pathogenic Coding sequence variant, frameshift variant
rs1135401817 G>A Likely-pathogenic Missense variant, genic downstream transcript variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT027656 hsa-miR-98-5p Microarray 19088304
MIRT044640 hsa-miR-320a CLASH 23622248
MIRT538438 hsa-miR-497-3p PAR-CLIP 22012620
MIRT538437 hsa-miR-181a-2-3p PAR-CLIP 22012620
MIRT538436 hsa-miR-610 PAR-CLIP 22012620
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0000139 Component Golgi membrane IEA
GO:0000139 Component Golgi membrane NAS 27066481
GO:0000139 Component Golgi membrane TAS
GO:0000301 Process Retrograde transport, vesicle recycling within Golgi IMP 27066481
GO:0005515 Function Protein binding IPI 15047703, 26871637, 33961781
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
606821 14857 ENSG00000164597
Protein
UniProt ID Q9UP83
Protein name Conserved oligomeric Golgi complex subunit 5 (COG complex subunit 5) (13S Golgi transport complex 90 kDa subunit) (GTC-90) (Component of oligomeric Golgi complex 5) (Golgi transport complex 1)
Protein function Required for normal Golgi function.
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF10392 COG5 66 189 Golgi transport complex subunit 5 Family
Sequence
MGWVGGRRRDSASPPGRSRSAADDINPAPANMEGGGGSVAVAGLGARGSGAAAATVRELL
QDGCYSDFLNEDFDVKTYTSQSIHQAVIAEQLAKLAQGISQLDRELHLQVVARHEDLLAQ
ATGIESLEGVLQMMQTRIGALQGAVDRIKAKIVEPYNKIVARTAQLARLQVACDLLRRII
RILNLSKRL
QGQLQGGSREITKAAQSLNELDYLSQGIDLSGIEVIENDLLFIARARLEVE
NQAKRLLEQGLETQNPTQVGTALQVFYNLGTLKDTITSVVDGYCATLEENINSALDIKVL
TQPSQSAVRGGPGRSTMPTPGNTAALRASFWTNMEKLMDHIYAVCGQVQHLQKVLAKKRD
PVSHICFIEEIVKDGQPEIFYTFWNSVTQALSSQFHMATNSSMFLKQAFEGEYPKLLRLY
NDLWKRLQQYSQHIQGNFNASGTTDLYVDLQHMEDDAQDIFIPKKPDYDPEKALKDSLQP
YEAAYLSKSLSRLFDPINLVFPPGGRNPPSSDELDGIIKTIASELNVAAVDTNLTLAVSK
NVAKTIQLYSVKSEQLLSTQGDASQVIGPLTEGQRRNVAVVNSLYKLHQSVTKAIHALME
NAVQPLLTSVGDAIEAIIITMHQEDFSGSLSSSGKPDVPCSLYMKELQGFIARVMSDYFK
HFECLDFVFDNTEAIAQRAVELFIRHASLIRPLGEGGKMRLAADFAQMELAVGPFCRRVS
DLGKSYRMLRSFRPLLFQASEHVASSPALGDVIPFSIIIQFLFTRAPAELKSPFQRAEWS
HTRFSQWLDDHPSEKDRLLLIRGALEAYVQSVRSREGKEFAPVYPIMVQLLQKAMSALQ
Sequence length 839
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  Reactome
    COPI-mediated anterograde transport
Intra-Golgi traffic
Retrograde transport at the Trans-Golgi-Network
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Associated diseases Disease associations categorized as Causal (pathogenic variants), Unknown (uncertain genetic evidence), or Text Mining (literature-based associations)
Causal Diseases caused by PATHOGENIC or LIKELY PATHOGENIC variants from ClinVar only
Disease merge term Disease name dbSNP ID References
Congenital Disorder Of Glycosylation COG5-congenital disorder of glycosylation rs777937112, rs1231928102, rs1584977236, rs1422285851, rs1562937199, rs1135401817, rs773281248, rs1554464495, rs1563018529 N/A
Unknown Includes: (1) ClinVar NON-pathogenic variants (Uncertain, Benign, Conflicting, VUS), (2) GenCC associations, (3) GWAS associations, (4) CBGDA evidence-based associations. NOTE: Diseases with pathogenic evidence are excluded to avoid conflicts.
Disease merge term Disease name Evidence References Source
Atrial Fibrillation Atrial fibrillation N/A N/A GWAS
Coronary artery disease Coronary artery disease N/A N/A GWAS
Dyslexia Dyslexia N/A N/A GWAS
Insomnia Insomnia N/A N/A GWAS
Associations from Text Mining Disease associations identified through Pubtator
Disease Name Relationship Type References
Ataxia with vitamin E deficiency Associate 28960046
Cerebellar Diseases Associate 28960046
Congenital Disorder Of Glycosylation Type I IIX Associate 23228021
Congenital Disorders of Glycosylation Associate 19690088
COVID 19 Stimulate 35022497
Epiphyseal dysplasia multiple 1 Associate 19690088
Friedreich Ataxia Associate 33277529
HEM dysplasia Associate 33277529
Language Disorders Associate 19690088
Leber Congenital Amaurosis Associate 33277529