Gene Gene information from NCBI Gene database.
Entrez ID 10419
Gene name Protein arginine methyltransferase 5
Gene symbol PRMT5
Synonyms (NCBI Gene)
HRMT1L5HSL7IBP72JBP1SKB1SKB1Hs
Chromosome 14
Chromosome location 14q11.2
Summary This gene encodes an enzyme that belongs to the methyltransferase family. The encoded protein catalyzes the transfer of methyl groups to the amino acid arginine, in target proteins that include histones, transcriptional elongation factors and the tumor su
miRNA miRNA information provided by mirtarbase database.
103
miRTarBase ID miRNA Experiments Reference
MIRT004350 hsa-miR-19a-3p Western blot 18694959
MIRT000983 hsa-miR-25-3p Western blot 18694959
MIRT000982 hsa-miR-32-5p Western blot 18694959
MIRT004351 hsa-miR-92b-3p Western blot 18694959
MIRT004352 hsa-miR-96-5p Western blot 18694959
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
68
GO ID Ontology Definition Evidence Reference
GO:0000387 Process Spliceosomal snRNP assembly IMP 17709427
GO:0000387 Process Spliceosomal snRNP assembly NAS 11756452
GO:0000785 Component Chromatin IDA 33376131
GO:0002039 Function P53 binding IPI 19011621
GO:0003714 Function Transcription corepressor activity ISS
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
604045 10894 ENSG00000100462
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
O14744
Protein name Protein arginine N-methyltransferase 5 (PRMT5) (EC 2.1.1.320) (72 kDa ICln-binding protein) (Histone-arginine N-methyltransferase PRMT5) (Jak-binding protein 1) (Shk1 kinase-binding protein 1 homolog) (SKB1 homolog) (SKB1Hs) [Cleaved into: Protein arginin
Protein function Arginine methyltransferase that can both catalyze the formation of omega-N monomethylarginine (MMA) and symmetrical dimethylarginine (sDMA), with a preference for the formation of MMA (PubMed:10531356, PubMed:11152681, PubMed:11747828, PubMed:12
PDB 4GQB , 4X60 , 4X61 , 4X63 , 5C9Z , 5EMJ , 5EMK , 5EML , 5EMM , 5FA5 , 6CKC , 6K1S , 6RLL , 6RLQ , 6UGH , 6UXX , 6UXY , 6V0N , 6V0O , 6V0P , 7BO7 , 7BOC , 7KIB , 7KIC , 7KID , 7L1G , 7M05 , 7MX7 , 7MXA , 7MXC , 7MXG , 7MXN , 7S0U , 7S1P , 7S1Q , 7S1R , 7S1S , 7SER , 7SES , 7U30 , 7UOH , 7UY1 , 7UYF , 7ZUP , 7ZUQ , 7ZUU , 7ZUY , 7ZV2 , 7ZVL , 7ZVU , 8CSG
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF17285 PRMT5_TIM 37 290 PRMT5 TIM barrel domain Domain
PF05185 PRMT5 295 464 PRMT5 arginine-N-methyltransferase Domain
PF17286 PRMT5_C 467 635 PRMT5 oligomerisation domain Domain
Tissue specificity TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:9556550}.
Sequence
Sequence length 637
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  Reactome
    snRNP Assembly
RMTs methylate histone arginines
Regulation of TP53 Activity through Methylation
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
5
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
LYMPHOMA, LARGE B-CELL, DIFFUSE CTD
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
MEDULLOBLASTOMA CTD
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
MULTIPLE MYELOMA CTD
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Ovarian serous cystadenocarcinoma Uncertain significance ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text MiningDisease associations identified through Pubtator
Disease Name Relationship Type References Evidence Score
Adenocarcinoma Associate 24775604
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma in Situ Associate 24775604
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma of Lung Associate 24775604, 27270440, 34200178
★☆☆☆☆
Found in Text Mining only
Alzheimer Disease Associate 33788842
★☆☆☆☆
Found in Text Mining only
Arthritis Rheumatoid Associate 27860244
★☆☆☆☆
Found in Text Mining only
beta Thalassemia Associate 28669403
★☆☆☆☆
Found in Text Mining only
Breast Neoplasms Associate 21700716, 25704480, 26420673, 27270440, 28381188, 28977470, 30289978, 33462997, 33782401, 36913304, 37400460, 37458145
★☆☆☆☆
Found in Text Mining only
Breast Neoplasms Stimulate 36161608
★☆☆☆☆
Found in Text Mining only
Carcinogenesis Associate 24326178, 25475372, 34200178, 36878903
★☆☆☆☆
Found in Text Mining only
Carcinoid Tumor Associate 24326178
★☆☆☆☆
Found in Text Mining only