Gene Gene information from NCBI Gene database.
Entrez ID 10367
Gene name Mitochondrial calcium uptake 1
Gene symbol MICU1
Synonyms (NCBI Gene)
CALCCBARA1EFHA3MPXPSara CALC
Chromosome 10
Chromosome location 10q22.1
Summary This gene encodes an essential regulator of mitochondrial Ca2+ uptake under basal conditions. The encoded protein interacts with the mitochondrial calcium uniporter, a mitochondrial inner membrane Ca2+ channel, and is essential in preventing mitochondrial
SNPs SNP information provided by dbSNP.
9
SNP ID Visualize variation Clinical significance Consequence
rs369915689 C>T Pathogenic Splice donor variant
rs375664373 C>A,G Likely-pathogenic Coding sequence variant, genic upstream transcript variant, non coding transcript variant, missense variant
rs538329212 G>A,C,T Pathogenic Non coding transcript variant, genic upstream transcript variant, synonymous variant, coding sequence variant, stop gained, missense variant
rs749124658 C>- Pathogenic Coding sequence variant, genic upstream transcript variant, frameshift variant, non coding transcript variant
rs754639936 C>G,T Pathogenic Splice acceptor variant
miRNA miRNA information provided by mirtarbase database.
335
miRTarBase ID miRNA Experiments Reference
MIRT037375 hsa-miR-877-5p CLASH 23622248
MIRT1148407 hsa-miR-15a CLIP-seq
MIRT1148408 hsa-miR-15b CLIP-seq
MIRT1148409 hsa-miR-16 CLIP-seq
MIRT1148410 hsa-miR-195 CLIP-seq
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
68
GO ID Ontology Definition Evidence Reference
GO:0005246 Function Calcium channel regulator activity IDA 32494073
GO:0005509 Function Calcium ion binding IBA
GO:0005509 Function Calcium ion binding IDA 23101630, 24514027
GO:0005509 Function Calcium ion binding IEA
GO:0005509 Function Calcium ion binding TAS 26975899
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
605084 1530 ENSG00000107745
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q9BPX6
Protein name Calcium uptake protein 1, mitochondrial (Atopy-related autoantigen CALC) (ara CALC) (Calcium-binding atopy-related autoantigen 1) (allergen Hom s 4)
Protein function Calcium sensor of the mitochondrial calcium uniporter (MCU) channel, which senses calcium level via its EF-hand domains (PubMed:20693986, PubMed:23101630, PubMed:23747253, PubMed:24313810, PubMed:24332854, PubMed:24503055, PubMed:24560927, PubMe
PDB 4NSC , 4NSD , 6K7Y , 6LB7 , 6LB8 , 6LE5 , 6WDN , 6WDO , 6XJV , 6XJX , 6XQN , 6XQO
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF13202 EF-hand_5 223 247 EF hand Domain
Tissue specificity TISSUE SPECIFICITY: Expressed in epithelial cell lines. Strongly expressed in epidermal keratinocytes and dermal endothelial cells. {ECO:0000269|PubMed:16002733, ECO:0000269|PubMed:9806765}.
Sequence
MFRLNSLSALAELAVGSRWYHGGSQPIQIRRRLMMVAFLGASAVTASTGLLWKRAHAESP
PCVDNLKSDIGDKGKNKDEGDVCNHEKKTADLAPHPEEKKKKRSGFRDRKVMEYENRIRA
YSTPDKIFRYFATLKVISEPGEAEVFMTPEDFVRSITPNEKQPEHLGLDQYIIKRFDGKK
ISQEREKFADEGSIFYTLGECGLISFSDYIFLTTVLSTPQRNFEIAFKMFDLNGDGEVDM
EEFEQVQ
SIIRSQTSMGMRHRDRPTTGNTLKSGLCSALTTYFFGADLKGKLTIKNFLEFQ
RKLQHDVLKLEFERHDPVDGRITERQFGGMLLAYSGVQSKKLTAMQRQLKKHFKEGKGLT
FQEVENFFTFLKNINDVDTALSFYHMAGASLDKVTMQQVARTVAKVELSDHVCDVVFALF
DCDGNGELSNKEFVSIMKQRLMRGLEKPKDMGFTRLMQAMWKCAQETAWDFALPKQ
Sequence length 476
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  Reactome
    Mitochondrial calcium ion transport
Processing of SMDT1
Associated diseases Disease associations from ClinVar categorized as Causal (Pathogenic/Likely Pathogenic) or Unknown.
32
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
MICU1-related disorder Likely pathogenic; Pathogenic rs755651388 RCV003397615
Neurodevelopmental disorder Pathogenic; Likely pathogenic rs369069489, rs749124658 RCV002277672
RCV002279272
Proximal myopathy with extrapyramidal signs Likely pathogenic; Pathogenic rs1840027040, rs1840335901, rs754639936, rs369915689, rs746453954, rs375664373, rs755651388, rs2495370637, rs1135401814, rs749124658, rs538329212, rs375502236 RCV001328705
RCV001335371
RCV000087303
RCV000087304
RCV001527687
RCV001527686
RCV004798981
RCV003493237
RCV000496153
RCV000496192
RCV004579549
RCV001527685
Unknown Diseases with uncertain, conflicting, or no pathogenic evidence in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Abnormality of the nervous system Conflicting classifications of pathogenicity rs777327250 RCV001814130
Associations from Text MiningDisease associations identified through Pubtator
Disease Name Relationship Type References
Anophthalmia with pulmonary hypoplasia Associate 32799327
Basal Ganglia Diseases Associate 28132899, 39973469
Breast Neoplasms Associate 24802861
Cognition Disorders Associate 28132899
Drug Related Side Effects and Adverse Reactions Associate 30403999
Inflammation Stimulate 16002632
Leukocytosis Associate 32323775
Muscle Weakness Associate 28132899, 39973469
Muscular Diseases Associate 39973469
Muscular Dystrophies Limb Girdle Associate 32293312, 39973469