Gene Gene information from NCBI Gene database.
Entrez ID 10297
Gene name APC regulator of Wnt signaling pathway 2
Gene symbol APC2
Synonyms (NCBI Gene)
APCLMRT74
Chromosome 19
Chromosome location 19p13.3
Summary This gene encodes a strongly conserved protein that has an N-terminal coiled-coil domain followed by an armadillo domain, five 20-amino acid repeats, and two SAMP domains. This protein promotes the assembly of a multiprotein complex that recruits and phos
SNPs SNP information provided by dbSNP.
6
SNP ID Visualize variation Clinical significance Consequence
rs559460131 C>A,T Conflicting-interpretations-of-pathogenicity Synonymous variant, coding sequence variant
rs886040957 CCC>-,CCCC Pathogenic Frameshift variant, coding sequence variant, inframe deletion
rs1472207337 C>T Pathogenic Coding sequence variant, stop gained
rs1599137041 C>A Pathogenic Coding sequence variant, stop gained
rs1599155642 TGGCCGC>- Pathogenic Frameshift variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
252
miRTarBase ID miRNA Experiments Reference
MIRT711934 hsa-miR-6849-3p HITS-CLIP 19536157
MIRT711933 hsa-miR-361-3p HITS-CLIP 19536157
MIRT711932 hsa-miR-4758-3p HITS-CLIP 19536157
MIRT711931 hsa-miR-4290 HITS-CLIP 19536157
MIRT711930 hsa-miR-4632-3p HITS-CLIP 19536157
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
46
GO ID Ontology Definition Evidence Reference
GO:0000226 Process Microtubule cytoskeleton organization IMP 25753423
GO:0001708 Process Cell fate specification IBA
GO:0005515 Function Protein binding IPI 10644998, 10646860
GO:0005737 Component Cytoplasm IDA 11691822
GO:0005737 Component Cytoplasm IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
612034 24036 ENSG00000115266
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
O95996
Protein name Adenomatous polyposis coli protein 2 (Adenomatous polyposis coli protein-like) (APC-like)
Protein function Stabilizes microtubules and may regulate actin fiber dynamics through the activation of Rho family GTPases (PubMed:25753423). May also function in Wnt signaling by promoting the rapid degradation of CTNNB1 (PubMed:10021369, PubMed:11691822, PubM
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF16689 APC_N_CC 6 57 Coiled-coil N-terminus of APC, dimerisation domain Coiled-coil
PF11414 Suppressor_APC 124 205 Family
PF18797 APC_rep 357 431 Adenomatous polyposis coli (APC) repeat Repeat
PF00514 Arm 614 654 Armadillo/beta-catenin-like repeat Repeat
PF16629 Arm_APC_u3 697 959 Disordered
PF05923 APC_r 1054 1076 APC repeat Motif
PF05923 APC_r 1146 1168 APC repeat Motif
PF05923 APC_r 1258 1281 APC repeat Motif
PF05924 SAMP 1335 1356 SAMP Motif Motif
PF05923 APC_r 1386 1409 APC repeat Motif
PF05924 SAMP 1621 1642 SAMP Motif Motif
PF05956 APC_basic 1786 2118 APC basic domain Family
Tissue specificity TISSUE SPECIFICITY: Widely expressed (at protein level). Specifically expressed in the CNS. {ECO:0000269|PubMed:10021369, ECO:0000269|PubMed:11691822, ECO:0000269|PubMed:9823329}.
Sequence
MASSVAPYEQLVRQVEALKAENSHLRQELRDNSSHLSKLETETSGMKEVLKHLQGKLEQE
ARVLVSSGQTEVLEQLKALQMDITSLYNLKFQPPTLGPEPAARTPEGSPVHGSGPSKDSF
GELSRATIRLLEELDRERCFLLNEIEKEEKEKLWYYSQLQGLSKRLDELPHVETQFSMQM
DLIRQQLEFEAQHIRSLMEERFGTS
DEMVQRAQIRASRLEQIDKELLEAQDRVQQTEPQA
LLAVKSVPVDEDPETEVPTHPEDGTPQPGNSKVEVVFWLLSMLATRDQEDTARTLLAMSS
SPESCVAMRRSGCLPLLLQILHGTEAAAGGRAGAPGAPGAKDARMRANAALHNIVFSQPD
QGLARKEMRVLHVLEQIRAYCETCWDWLQARDGGPEGGGAGSAPIPIEPQICQATCAVMK
LSFDEEYRRAM
NELGGLQAVAELLQVDYEMHKMTRDPLNLALRRYAGMTLTNLTFGDVAN
KATLCARRGCMEAIVAQLASDSEELHQVVSSILRNLSWRADINSKKVLREAGSVTALVQC
VLRATKESTLKSVLSALWNLSAHSTENKAAICQVDGALGFLVSTLTYKCQSNSLAIIESG
GGILRNVSSLVATREDYRQVLRDHNCLQTLLQHLTSHSLTIVSNACGTLWNLSARSARDQ
ELLWDLGAVGMLRNLVHSKHKMIAMGSAAALRNLLAHRPAKHQAAATAVSPGSCVPSLYV
RKQRALEAELDARHLAQALEHLEKQGPPAAEAATKKPLPPLRHLDGLAQDYASDSGCFDD
DDAPSSLAAAAATGEPASPAALSLFLGSPFLQGQALARTPPTRRGGKEAEKDTSGEAAVA
AKAKAKLALAVARIDQLVEDISALHTSSDDSFSLSSGDPGQEAPREGRAQSCSPCRGPEG
GRREAGSRAHPLLRLKAAHASLSNDSLNSGSASDGYCPREHMLPCPLAALASRREDPRC
G
QPRPSRLDLDLPGCQAEPPAREATSADARVRTIKLSPTYQHVPLLEGASRAGAEPLAGPG
ISPGARKQAWLPADHLSKVPEKLAAAPLSVASKALQKLAAQEGPLSLSRCSSLSSLSSAG
RPGPSEGGDLDDSDSSLEGLEEAGPSEAELDSTWRAPGATSLPVAIPAPRRNRGRGLGVE
DATPSSSSENYVQETPLVLSRCSSVSSLGSFESPSIASSIPSEPCSGQGSGTISPSELPD
SPGQTMPPSRSKTPPLAPAPQGPPEATQFSLQWESYVKRFLDIADCRERCRLPSELDAGS
VRFTVEKPDENFSCASSLSAL
ALHEHYVQQDVELRLLPSACPERGGGAGGAGLHFAGHRR
REEGPAPTGSRPRGAADQELELLRECLGAAVPARLRKVASALVPGRRALPVPVYMLVPAP
APAQEDDSCTDSAEGTPVNFSSAASLSDETLQGPPRDQPGGPAGRQRPTGRPTSARQAMG
HRHKAGGAGRSAEQSRGAGKNRAGLELPLGRPPSAPADKDGSKPGRTRGDGALQSLCLTT
PTEEAVYCFYGNDSDEEPPAAAPTPTHRRTSAIPRAFTRERPQGRKEAPAPSKAAPAAPP
PARTQPSLIADETPPCYSLSSSASSLSEPEPSEPPAVHPRGREPAVTKDPGPGGGRDSSP
SPRAAEELLQRCISSALPRRRPPVSGLRRRKPRATRLDERPAEGSRERGEEAAGSDRASD
LDSVEWRAIQEGANSIVTWLHQAAAATREASSESDSILSFVSGLSVGSTLQPPKHRKGRQ
AEGEMGSARRPEKRGAASVKTSGSPRSPAGPEKPRGTQKTTPGVPAVLRGRTVIYVPSPA
PRAQPKGTPGPRATPRKVAPPCLAQPAAPAKVPSPGQQRSRSLHRPAKTSELATLSQPPR
SATPPARLAKTPSSSSSQTSPASQPLPRKRPPVTQAAGALPGPGASPVPKTPARTLLAKQ
HKTQRSPVRIPFMQRPARRGPPPLARAVPEPGPRGRAGTEAGPGARGGRLGLVRVASALS
SGSESSDRSGFRRQLTFIKESPGLRRRRSELSSAESAASAPQGASPRRGRPALPAVFLCS
SRCEELRAAPRQGPAPARQRPPAARPSPGERPARRTTSESPSRLPVRAPAARPETVKRYA
SLPHISVARRPDGAVPAA
PASADAARRSSDGEPRPLPRVAAPGTTWRRIRDEDVPHILRS
TLPATALPLRGSTPEDAPAGPPPRKTSDAVVQTEEVAAPKTNSSTSPSLETREPPGAPAG
GQLSLLGSDVDGPSLAKAPISAPFVHEGLGVAVGGFPASRHGSPSRSARVPPFNYVPSPM
VVAATTDSAAEKAPATASATLLE
Sequence length 2303
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG 
  Wnt signaling pathway
Hippo signaling pathway
Signaling pathways regulating pluripotency of stem cells
Regulation of actin cytoskeleton
Cushing syndrome
Alzheimer disease
Pathways of neurodegeneration - multiple diseases
Human papillomavirus infection
Pathways in cancer
MicroRNAs in cancer
Colorectal cancer
Endometrial cancer
Basal cell carcinoma
Breast cancer
Hepatocellular carcinoma
Gastric cancer
 
Associated diseases Disease associations from ClinVar categorized as Causal (Pathogenic/Likely Pathogenic) or Unknown.
105
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
APC2-related disorder Likely pathogenic rs2512495372 RCV003964608
Cortical dysplasia, complex, with other brain malformations 10 Likely pathogenic; Pathogenic rs200660071, rs2512475700, rs1472207337, rs1599166793, rs1599137041, rs1599155642 RCV003152863
RCV003153051
RCV000856661
RCV000856662
RCV000856663
RCV000856664
Esophageal atresia/tracheoesophageal fistula Likely pathogenic rs2083820577 RCV001172287
Intellectual developmental disorder, autosomal recessive 74 Pathogenic; Likely pathogenic rs1338563418, rs886040957, rs2512463430 RCV001823947
RCV000258004
RCV004595376
Unknown Diseases with uncertain, conflicting, or no pathogenic evidence in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
See cases Uncertain significance rs750829429 RCV002252576
Associations from Text MiningDisease associations identified through Pubtator
Disease Name Relationship Type References
Adenocarcinoma of Lung Associate 30779081
Adenomatous Polyposis Coli Associate 23840886, 29866653
Alzheimer Disease Associate 26035058
Brain Neoplasms Inhibit 10551328
Breast Neoplasms Associate 33503040
Carcinogenesis Associate 21455633, 30510602
Colitis Ulcerative Associate 18716850, 30473377
Colorectal Neoplasms Associate 19190129, 19750230, 21455633, 23840886, 28100780, 30510602, 32951505
Crohn Disease Associate 32229654
Epilepsy Associate 37657306, 38523034