Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
10155
Gene name Gene Name - the full gene name approved by the HGNC.
Tripartite motif containing 28
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
TRIM28
Synonyms (NCBI Gene) Gene synonyms aliases
KAP1, PPP1R157, RNF96, TF1B, TIF1B, TIF1beta
Chromosome Chromosome number
19
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
19q13.43
Summary Summary of gene provided in NCBI Entrez Gene.
The protein encoded by this gene mediates transcriptional control by interaction with the Kruppel-associated box repression domain found in many transcription factors. The protein localizes to the nucleus and is thought to associate with specific chromati
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT052068 hsa-let-7b-5p CLASH 23622248
MIRT051347 hsa-miR-15a-5p CLASH 23622248
MIRT049953 hsa-miR-30a-5p CLASH 23622248
MIRT049122 hsa-miR-92a-3p CLASH 23622248
MIRT047101 hsa-miR-183-5p CLASH 23622248
Transcription factors
Transcription factor Regulation Reference
ZNF350 Unknown 22975076
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0000122 Process Negative regulation of transcription by RNA polymerase II IEA
GO:0000785 Component Chromatin IBA 21873635
GO:0000791 Component Euchromatin IEA
GO:0000792 Component Heterochromatin IEA
GO:0001837 Process Epithelial to mesenchymal transition ISS
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
601742 16384 ENSG00000130726
Protein
UniProt ID Q13263
Protein name Transcription intermediary factor 1-beta (TIF1-beta) (E3 SUMO-protein ligase TRIM28) (EC 2.3.2.27) (KRAB-associated protein 1) (KAP-1) (KRAB-interacting protein 1) (KRIP-1) (Nuclear corepressor KAP-1) (RING finger protein 96) (RING-type E3 ubiquitin trans
Protein function Nuclear corepressor for KRAB domain-containing zinc finger proteins (KRAB-ZFPs). Mediates gene silencing by recruiting CHD3, a subunit of the nucleosome remodeling and deacetylation (NuRD) complex, and SETDB1 (which specifically methylates histo
PDB 1FP0 , 2RO1 , 2YVR , 6H3A , 6I9H , 6QAJ , 6QU1 , 7Z36
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF14634 zf-RING_5 64 122 zinc-RING finger domain Domain
PF00643 zf-B_box 148 195 B-box zinc finger Domain
PF00643 zf-B_box 204 245 B-box zinc finger Domain
PF00628 PHD 627 672 PHD-finger Domain
Tissue specificity TISSUE SPECIFICITY: Expressed in all tissues tested including spleen, thymus, prostate, testis, ovary, small intestine, colon and peripheral blood leukocytes. {ECO:0000269|PubMed:9016654}.
Sequence
MAASAAAASAAAASAASGSPGPGEGSAGGEKRSTAPSAAASASASAAASSPAGGGAEALE
LLEHCGVCRERLRPEREPRLLPCLHSACSACLGPAAPAAANSSGDGGAAGDGTVVDCPVC
KQ
QCFSKDIVENYFMRDSGSKAATDAQDANQCCTSCEDNAPATSYCVECSEPLCETCVEA
HQRVKYTKDHTVRST
GPAKSRDGERTVYCNVHKHEPLVLFCESCDTLTCRDCQLNAHKDH
QYQFL
EDAVRNQRKLLASLVKRLGDKHATLQKSTKEVRSSIRQVSDVQKRVQVDVKMAIL
QIMKELNKRGRVLVNDAQKVTEGQQERLERQHWTMTKIQKHQEHILRFASWALESDNNTA
LLLSKKLIYFQLHRALKMIVDPVEPHGEMKFQWDLNAWTKSAEAFGKIVAERPGTNSTGP
APMAPPRAPGPLSKQGSGSSQPMEVQEGYGFGSGDDPYSSAEPHVSGVKRSRSGEGEVSG
LMRKVPRVSLERLDLDLTADSQPPVFKVFPGSTTEDYNLIVIERGAAAAATGQPGTAPAG
TPGAPPLAGMAIVKEEETEAAIGAPPTATEGPETKPVLMALAEGPGAEGPRLASPSGSTS
SGLEVVAPEGTSAPGGGPGTLDDSATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVP
GEEWSCSLCHVL
PDLKEEDGSLSLDGADSTGVVAKLSPANQRKCERVLLALFCHEPCRPL
HQLATDSTFSLDQPGGTLDLTLIRARLQEKLSPPYSSPQEFAQDVGRMFKQFNKLTEDKA
DVQSIIGLQRFFETRMNEAFGDTKFSAVLVEPPPMSLPGAGLSSQELSGGPGDGP
Sequence length 835
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  Reactome
    Generic Transcription Pathway
SUMOylation of transcription cofactors
HCMV Early Events
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Aniridia Aniridia rs1565200471, rs121907912, rs121907915, rs121907913, rs121907914, rs1131692318, rs121907916, rs121907917, rs794726661, rs121907918, rs121907920, rs121907922, rs121907927, rs121907928, rs878852979
View all (159 more)
Colorectal cancer Colorectal Carcinoma rs137854568, rs137854573, rs137854575, rs387906234, rs121908380, rs121908702, rs267606674, rs794729661, rs121909055, rs281865417, rs267606884, rs28934575, rs587776769, rs104893815, rs587776800
View all (467 more)
30510241
Colorectal neoplasms Colorectal Neoplasms rs28929483, rs63751108, rs28929484, rs63749831, rs63750047, rs63751207, rs63749811, rs1553350126, rs63750875, rs63750955, rs587776706, rs63750871, rs587776715, rs63751466, rs63750049
View all (1682 more)
30510241
Hypertension Hypertensive disease rs13306026
Unknown
Disease term Disease name Evidence References Source
Atherosclerosis Atherosclerosis 31351049 ClinVar
Wilms tumor kidney Wilms tumor, childhood kidney Wilms tumor GenCC
Associations from Text Mining
Disease Name Relationship Type References
Adenocarcinoma of Lung Inhibit 24983967
Adenocarcinoma of Lung Associate 29127420, 33091876, 33221751
Atherosclerosis Associate 32725144
Autism Spectrum Disorder Associate 35682642
Breast Neoplasms Associate 27412325, 28068325, 31253870, 35031618
Burkitt Lymphoma Associate 28249048
Carcinogenesis Associate 38058023
Carcinoma Hepatocellular Associate 30309319, 33589597, 35142083, 36238495, 36354136, 37870748, 40234915
Carcinoma Merkel Cell Associate 32156811
Carcinoma Non Small Cell Lung Associate 37748077