Disease Term Disease ID Gene Symbol References
Microcephaly C0025958 AARS1
ACADSB
ACTB
ACTG1
ACTG2
ADAR
ADD3
ADSL
AGA
AGT
AGTR1
AHCY
AHSG
ALDH3A2
ANK1
ARCN1
ARSL
ARVCF
RERE
ATP1A2 30690204
ATP5F1A
ATP6V1A
ATP7A
ATR
ATRX
KIF1A
AUH
BCR
BDNF
BLM
BMP4
BRCA1
BRCA2
BUB1
BUB1B 15475955
CACNA1A
CACNA1B
SLC25A20
CARS1 30824121
ENTPD1
CDC6
CDH11
CDK5
CDK6
CENPE
CENPF 25564561
CHKB
CHN1
CHRNA7
CHRNG
CHUK
ERCC8
CLCN4
CLTC
COL4A1
COMT
COX7B
COX15
CPT2
CREBBP
CRKL
CSNK2A1
CTBP1
CTNNB1
CTNND2
CTSD
CYB5A
DAG1
ACE
DDB2
DDX3X
DDX11
DGUOK
DHCR7
DHCR24
CYB5R3
DIAPH1
DKC1
DLAT
DLD
DNM1
DNA2
DYNC1H1 23603762
DYNC1I2 31079899
DNMT3A 30478443
DPAGT1
DPP6
DPYD
DYRK1A 25944381
PHC1
EEF1A2
EFNB1
EGF
EIF2S3 28055140
ELN
EP300
ERCC1
ERCC2
ERCC3
ERCC4
ERCC5
ERCC6 18628313, 10739753
EXT1
EXT2
FANCA
FANCC
FANCD2
FANCE
BPTF
FANCB
FANCF
FANCG
FBN1
FKTN
FGF8
FGF12
FGFR1
FGFR3
FH
FOXG1 18627055
FLII
FSHR
NR5A1
FUT8
KDSR
GABRB2
GABRD
GABRG2
GAD1
GAS1
GATA4
GBA
GJA1
GJA5
GJA8
GJB3
GLI2
GNAO1
GOT2 31422819
GP1BB
GRIA4
GRIK2
GRIN2D
GTF2E2
GTF2I
BRF1
HBA1
HBA2
HCCS
HCFC1
HMGB3
HMGCL
HNMT
HNRNPU
HSPG2
NDST1
IARS1 27426735
SP110
IGF1
IGF1R
RBPJ
INSR
ITGA3
ITGB6
STT3A
ITPA
KCNA1
KCNA2
KCNA4
KCNB1
KCNJ2
KCNJ6
KCNJ11
KIF2A 23603762
KIF5A
KIF5C 23603762
KIT
KIF11
L1CAM
LETM1
LFNG
LIG4 11779494
LIMK1
LRP5
LSS 29016354
LTC4S
SMAD4
MCM4
MCM5
MECP2
MEIS2
MGAT2
KMT2A
ALDH6A1
MOCS1
MOCS2
COX1
COX2
COX3
MTHFR
ND1
ND2
ND3
ND4
ND5
ND6
TRNF
TRNH
TRNL1
TRNQ
TRNS1
TRNS2
TRNW
MVK
MYCN
MYH3
NBN
NDP
NDUFA1
NDUFA6
NDUFB3
NDUFB9
NDUFB10
NDUFS1
NDUFS2
NDUFS3
NDUFV1
NDUFS4
NDUFS6
NDUFS8
NDUFV2
NEUROD2
NF1
NODAL
NTRK2
SIX6
ORC1 21358633
ORC4
PRDX1
PAH
PAK3
PARN
PAX3
PAX6
PCNT
PDGFB
PDGFRB
PDHA1
PEX1
PEX6
PEX7
PEX10
PEX12
PEX13
PEX14
PIGC
PLP1
PMM2
EXOSC9
POLA1
POLE
POLG
POR
PPP3CA
PRKD1
PRKDC
MAPK1
MASP1
RELN
PSPH
PTCH1
PTS
PEX19
PEX2
PEX5
PYCR1
ALDH18A1
QARS1
QDPR
RAC1
RAD21
RAD51
RAD51C
RAP1A
RAP1B
RARS1
RB1
RBBP8
REN
DPF2
RFC2
RPL10
RPS6KA3
RPS23
RREB1
CLIP1
SALL1
SARS1
SBF1
MSMO1
SC5D
SCN2A
SCN3A
SCN8A
SET
SHH
ST3GAL3
STIL
SIM1
SIX3
SKI
SLC1A2
SLC2A1 10980529, 9462754
SLC6A8
SLC16A2
SLC20A2
SNAI2
SMARCA2
SMARCA4
SMARCB1
SMARCC2
SMARCE1
SNRPB
SOX2
SOX4
SOX11
SPR
SSR4
CDKL5
STXBP1
ABCC8
TAF1
TAF6
TAF13
TAT
TBX1
TBCD 27666370, 27666374
TBCE
TBX6
TCF4 18728071
TDGF1
TERT
TFAP2A
TGIF1
NKX2-1
TOP3A
TP53
TRIO
TRPS1
TUBG1 23603762
TUFM
HIRA
UFD1
SLC35A2
KDM6A
EZR
CLIP2
WHCR
NSD2 30244530
NELFA
WT1
XPA
XPC
XRCC2
XRCC4
YWHAG
ZIC2
PCGF2
ZBTB16
ZNF148
RNF113A
TUBA1A
AIMP2
TUSC3
KAT6A
NUP214 30758658
PDHX
KMT2D
AAAS
HMGA2
AP3B2
DGCR6
ESS2
KDM5C
SMC1A
NAA10
LAGE3
ARID1A
TRRAP 28628100, 30424743
CDC45
H4C3 28920961
GNPAT
CUL4B
OGT
OFD1
PRSS12
PEX3
CNTNAP1
KCNAB2
IKBKG
AP3B1
CDK10
CASK 19165920
DCHS1
CRADD
PEX11B
SUCLA2
DPM1
SYNGAP1
SYNJ1
ST3GAL5
SGPL1
SLC5A6 29669219
AP1S2
FOXH1
KYNU
AP3D1
BAZ1B
SEMA5A
PIGQ
SMC3
AP4M1
ARHGEF2
BUB3
BMP15
XPR1
LARGE1
RAB11B
AIMP1
COPB2
TRIP13
ZNHIT3 28335020
SNAP29
EFTUD2
PLAA
PEX16
CRIPT
MED23
EIF2AK3
TBX4
TECR
MPDU1
GABBR2
GTF2IRD1
SEC24C
ZNF592
CEP135
CEP57
SEMA3E
HDAC4
ZEB2
TELO2
TECPR2
FIG4
NCAPD2
KIF14 24128419
MAFB
SLC12A6
DGCR2
FARSB 30014610
DNM1L 17460227
HUWE1
PQBP1 14634649, 15024694, 16740914
RAD50
BCAP31
ALG3
CD96
SF3B4
TRAIP 26595769
KATNB1
RXYLT1
WARS2
MICU1
TUBB3
TUBB4A
EMG1
MAD2L2
COG5
ZBTB18
SLC9A6
FBLN5
DEAF1
RNASEH2A
SLC35A1
POMT1
MTHFS
STAMBP 23542699
CTCF
FARS2
DLL3
AP4B1
YME1L1
PLK4 25344692
STAG2 25450604
RAI1
KIF1C
KDM5B
WDR4
CPLX1
MAPRE2
TLK2
LIAS
B4GAT1
CIT
AP4S1
MAN1B1
USP18
TREX1
PNKP 20118933
RNF13
PUF60
NTNG1
CNKSR2
TRAK1
DHX30
RAB3GAP1
RAB18
CEP152
WDFY3
CNOT1
ZNF292 29904178
TNIK
IQSEC2
SPART
POGZ
ANKLE2
DENND5A
NCAPD3
SATB2
RPGRIP1L
WASHC4
SZT2
ADNP
NCAPH 27737959
GRIP1
AP4E1
SLC35A3
BRD4 30302754
HAAO
SPIDR
KAT6B
ATP6V0A2
LEMD3
ORC6
FRRS1L
PISD 30858161
DSTYK
RAB3GAP2
TXN2
NIPBL
COG4
POLR1A
POC1A
RTTN
NDUFAF3
SAMHD1
SIN3A 27399968
PARS2
MMACHC
NECAP1
C2CD3
AUTS2
TCTN3
KIFBP 15883926
PHGDH
VPS33B
TINF2
TBL2
CYFIP2
B9D1
TUBGCP4
GPKOW
DLL1
DCPS
OSTM1
NDUFAF4
METTL5 31564433
UBE2T
ANKRD11
PSMC3IP
PYCR2
GMPPB
GMPPA
POMT2
SLC25A24
PSAT1
DONSON 28191891
GEMIN4
SLC45A1
NSDHL
CDON
TPRKB
GMNN
WDPCP
YARS2
TMX2 31270415
NDUFAF1
TRAPPC12
IER3IP1
RLIM
CRBN
NIN
PIGP
TMEM216
PCDH12 30459466, 29556033, 18477666, 27164683
TIMMDC1
RSRC1
MBTPS2
ACTL6B
UFC1 29868776
LARS1
TDP2
UFM1 29868776
LARP7
OTUD6B
SUFU
WWOX
RTEL1
INPP5K
TUBA8
BCL11A
FGFRL1
RIPK4
NANS
DGCR8
PRMT7
PUS7 30526862
NDUFB11
GTPBP2
TRIT1
CNNM2
DYM
NDE1
CC2D1A
QRICH1
BCOR
NSUN2
NCAPG2
MKS1
TMEM70
AGGF1
FANCL
RBM28
RFWD3
PNPO
CEP55
LINS1
SETD5
FANCI
TRAPPC14
SLC35C1
NOP10
DHTKD1
SLC30A10
FOXRED1
RNPC3
TRMT1
POMGNT1
CHD7
FLVCR2
OSGEP
NHP2
PEX26
PACS1
CCDC88A 30392057
HHAT
NUP133
CDK5RAP2
NGLY1
TBC1D23
MBD5
MCTP2
VPS11
CENPJ 16900296
TMEM126B
HDAC8
ZC4H2 26056227
KLHL7
SMG9
ALG1
FMN2
MRPS22
MFF
FAM20C
KIF15
CCDC47
KNL1
RPGRIP1
C12orf4
NUP107
VARS2
ZMIZ1 27479843, 26163108
THOC2
MCOLN1
MYORG
TBC1D24
SHROOM4
ARID1B
COG6
ARHGAP31
HACE1
CC2D2A
DOCK6
KCNT1
FANCM
EPG5
PRUNE1
KMT2C
SLC25A19
ALX4
TRAPPC11
VIPAS39
PIEZO2
ZNF335
PRDM16
XYLT1
IFIH1
NSD1
SIL1
ARV1
PORCN
PLEKHG2
ACD
NUP37
TSEN34 18711368
FTO
NDUFAF5
MBOAT7
FKRP
THOC6
TMEM231
RNASEH2B
EFL1
FAT4
MCPH1
TBL1XR1
PALB2
NARS2
SLC25A22
FBXO31
ALG9
EHMT1
NHEJ1
CSPP1
TCTN2
ALG13
UBA5
ZC3H14
DHDDS
PGAP1
FRAS1
EDC3
IFT74
CEP290
TTI2
FBXO11
NUBPL
CEP63 21983783, 26158450
PUS1
COASY
TSEN2 18711368
B9D2
ASXL3
LMAN2L
CLPB
TRIM8
CDT1
MED25
LAS1L
DDX59
PUS3 27055666
TRAPPC9
CDCA7
BRIP1
ATRIP
RNASEH2C
FAR1
POMK
PHF6
TMEM107
COG8
SLX4
COL25A1
NTNG2 31668703
HES7
MYO18B
GPT2 25758935
MFSD2A 26005868, 26005865
POMGNT2
LINGO1
PPP1R15B
WDR73
DISP1
PIGY
TUBGCP6
SELENOI
GFM1
UBE3B
RSPRY1
TMEM67
ATPAF2
NEK9
RFT1
NDUFAF2
GORAB
G6PC3
MGME1
ADAMTSL1
TRMT10A
PIGS
TP53RK
NACC1
TOE1
NUS1
METTL23
NDUFA11
GJB4
TBC1D20
GLYCTK
NADK2
RIPPLY2
MPLKIP
VPS37A
B3GLCT
MESP2
B3GALNT2
SIK1
CKAP2L
KCTD7
ESCO2
VPS13B
NAGS
SASS6
RNF168
SPATA5
ARX
ASXL1
ARID2
UBR1
LDHD
ACSF3
IBA57
FLCN
STT3B
TAPT1
TUBB
SAMD9L
JMJD1C
PHACTR1
BRAT1
STAC3
PTF1A
NALCN
ASPM
TSEN54 18711368
SLC13A5
WDR62 20890279, 20890278
UNC80
SUMF1
NSMCE2
NAT8L
CYP26C1
FREM2
TUBB2B
CTU2
HCN1
NDUFS7
ERCC6L2
LIPT2
MYMK
AGMO 31555905, 27000257
GTF2H5
MIR17HG 21892160
ALG11
CRPPA
RNU4ATAC
OCLN
MICROCEPHALY, PRIMARY AUTOSOMAL RECESSIVE, 1 C1855081 ANGPT2
CENPJ
MCPH1 20978018, 12046007, 15199523, 16211557
ASPM
MCPH1-AS1
Autosomal Recessive Primary Microcephaly C3711387, 2512 CDK6 23918663
PHC1
STIL
TAF13 28257693
COPB2 29036432
CEP135
KIF14 28892560
CIT 27453578
CEP152
ANKLE2 25259927
NCAPD3 27737959
PYCR2 27860360
TRAPPC14 30715179
CDK5RAP2
CENPJ
KNL1
MCPH1
CEP63
MFSD2A 26005868, 26005865
SASS6 24951542
ASPM
WDR62
METTL5
MICROCEPHALY 12, PRIMARY, AUTOSOMAL RECESSIVE C4015156 CDK6 23918663
MICROCEPHALY 13, PRIMARY, AUTOSOMAL RECESSIVE C4015080 CENPE 24748105
Microcephaly autosomal dominant C0220693 DPP6 23832105
MICROCEPHALY 11, PRIMARY, AUTOSOMAL RECESSIVE C3809431 PHC1 25548773, 23418308, 25558065
CIT 27453578
MICROCEPHALY, PRIMARY AUTOSOMAL RECESSIVE, 7 (disorder) C2675187 STIL 19215732, 22989186, 25218063
MICROCEPHALY 19, PRIMARY, AUTOSOMAL RECESSIVE C4540488 COPB2 29036432
MICROCEPHALY 8, PRIMARY, AUTOSOMAL RECESSIVE C3553414 CEP135 22521416
MICROCEPHALY 21, PRIMARY, AUTOSOMAL RECESSIVE C4693831 NCAPD2 27737959, 28097321
MICROCEPHALY 20, PRIMARY, AUTOSOMAL RECESSIVE C4693572 KIF14 30388224, 28892560, 29343805
MICROCEPHALY 4, PRIMARY, AUTOSOMAL RECESSIVE C1858516 CEP152 21131973
KNL1 22983954, 26626498
MICROCEPHALY 9, PRIMARY, AUTOSOMAL RECESSIVE C3553886 CEP152 20598275
MICROCEPHALY 22, PRIMARY, AUTOSOMAL RECESSIVE C4693834 NCAPD3 27737959
MICROCEPHALY 23, PRIMARY, AUTOSOMAL RECESSIVE C4693843 NCAPH 27737959
Microcephaly, Primary Autosomal Recessive, 3 C1858108 CDK5RAP2 28778786, 15793586, 27761245
Microcephaly, Primary Autosomal Recessive, 6 C1842109 CENPJ 15793586, 16900296, 22020124, 20522431
MICROCEPHALY, AMISH TYPE (disorder) C1846648 SLC25A19 19798730, 12185364, 17035501, 27604308
MICROCEPHALY 10, PRIMARY, AUTOSOMAL RECESSIVE C3554499 ZNF335 23178126, 28327206
MICROCEPHALY 24, PRIMARY, AUTOSOMAL RECESSIVE C4748555 NUP37 30179222
MICROCEPHALY 15, PRIMARY, AUTOSOMAL RECESSIVE C4225310 MFSD2A 26005868, 26005865, 12046007
MICROCEPHALY 14, PRIMARY, AUTOSOMAL RECESSIVE C4225338 SASS6 24951542
Microcephaly, Primary Autosomal Recessive, 5 C1837501 ASPM 12355089, 29706646, 19770472
MICROCEPHALY, PRIMARY AUTOSOMAL RECESSIVE, 2 (disorder) C1858535 WDR62 20890278, 20890279, 21496009, 20729831, 28377545
Microcephaly, Primary Autosomal Recessive, 2 C3501830 WDR62
MICROCEPHALY 18, PRIMARY, AUTOSOMAL DOMINANT C4479608 WDFY3 28191889, 27008544
MICROCEPHALY 17, PRIMARY, AUTOSOMAL RECESSIVE C4310723 CIT 27503289, 27453578, 27453579, 27519304
MICROCEPHALY 16, PRIMARY, AUTOSOMAL RECESSIVE C4225249 ANKLE2 25259927
Primary microcephaly C0431350 CTNNB1 26968164
DPP6 23832105
PHC1 25548773
RBBP8
STIL 25218063
CEP135
TUBGCP3
PLK4 25344692
CIT
PNKP
CEP152
POC1A 26791357
RTTN 22939636
INO80
NDE1 21529752
CDK5RAP2
CENPJ 16900296
KNL1 22983954
MCPH1
CEP63 26158450
TUBGCP6 22279524
TRMT10A 26535115
TUBA3E
TSEN15
ASPM
WDR62
OCLN
Autosomal dominant primary microcephaly 2514 DPP6
Secondary microcephaly C0431352 DYRK1A
BPTF 28942966
FOXG1
KCNQ1
MECP2
MTM1
PEX6
HUWE1
SLC9A6
RARS2
NACC1