Gene Gene information from NCBI Gene database. Download as csv Download as pdf
Entrez ID	100526767
Gene name	RNF103-CHMP3 readthrough
Gene symbol	RNF103-CHMP3
Synonyms (NCBI Gene)	CGI149CHMP3NEDFRNF103-VPS24VPS24hVps24
Chromosome	2
Chromosome location	2p11.2
Summary	This locus represents naturally occurring read-through transcription between the neighboring RNF103 (ring finger protein 103) and CHMP3 (charged multivesicular body protein 3) genes. The read-through transcript encodes a fusion protein that shares sequenc

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miRTarBase ID	miRNA	Experiments	Reference
MIRT712639	hsa-miR-141-5p	HITS-CLIP	19536157
MIRT712638	hsa-miR-6748-3p	HITS-CLIP	19536157
MIRT712637	hsa-miR-4421	HITS-CLIP	19536157
MIRT712636	hsa-miR-5699-3p	HITS-CLIP	19536157
MIRT712635	hsa-miR-1199-5p	HITS-CLIP	19536157
MIRT712634	hsa-miR-6751-3p	HITS-CLIP	19536157
MIRT712633	hsa-miR-3182	HITS-CLIP	19536157
MIRT712632	hsa-miR-4778-3p	HITS-CLIP	19536157
MIRT712631	hsa-miR-1225-3p	HITS-CLIP	19536157
MIRT712630	hsa-miR-1233-3p	HITS-CLIP	19536157
MIRT712629	hsa-miR-6740-3p	HITS-CLIP	19536157
MIRT712628	hsa-miR-4303	HITS-CLIP	19536157
MIRT712627	hsa-miR-7152-5p	HITS-CLIP	19536157
MIRT712626	hsa-miR-4659a-3p	HITS-CLIP	19536157
MIRT712625	hsa-miR-4659b-3p	HITS-CLIP	19536157
MIRT572285	hsa-miR-3662	PAR-CLIP	20371350
MIRT572284	hsa-miR-3646	PAR-CLIP	20371350
MIRT572283	hsa-miR-888-5p	PAR-CLIP	20371350
MIRT572282	hsa-miR-3613-3p	PAR-CLIP	20371350
MIRT572281	hsa-miR-371b-5p	PAR-CLIP	20371350
MIRT572280	hsa-miR-373-5p	PAR-CLIP	20371350
MIRT572279	hsa-miR-616-5p	PAR-CLIP	20371350
MIRT572278	hsa-miR-7850-5p	PAR-CLIP	20371350
MIRT572277	hsa-miR-129-5p	PAR-CLIP	20371350
MIRT534708	hsa-miR-34c-3p	PAR-CLIP	21572407
MIRT534707	hsa-miR-3617-3p	PAR-CLIP	21572407
MIRT534705	hsa-miR-3065-3p	PAR-CLIP	21572407
MIRT534704	hsa-miR-383-3p	PAR-CLIP	21572407
MIRT534703	hsa-miR-9-5p	PAR-CLIP	21572407
MIRT534702	hsa-miR-5587-5p	PAR-CLIP	21572407
MIRT534700	hsa-miR-133a-3p	PAR-CLIP	21572407
MIRT534699	hsa-miR-133b	PAR-CLIP	21572407
MIRT534708	hsa-miR-34c-3p	PAR-CLIP	22012620
MIRT534707	hsa-miR-3617-3p	PAR-CLIP	22012620
MIRT534706	hsa-miR-6760-3p	PAR-CLIP	22012620
MIRT534705	hsa-miR-3065-3p	PAR-CLIP	22012620
MIRT534704	hsa-miR-383-3p	PAR-CLIP	22012620
MIRT534703	hsa-miR-9-5p	PAR-CLIP	22012620
MIRT534702	hsa-miR-5587-5p	PAR-CLIP	22012620
MIRT534701	hsa-miR-3912-5p	PAR-CLIP	22012620
MIRT534700	hsa-miR-133a-3p	PAR-CLIP	22012620
MIRT534699	hsa-miR-133b	PAR-CLIP	22012620
MIRT496130	hsa-miR-500b-3p	PAR-CLIP	22291592
MIRT496129	hsa-miR-8064	PAR-CLIP	22291592
MIRT439766	hsa-miR-432-5p	HITS-CLIP	24374217
MIRT439766	hsa-miR-432-5p	HITS-CLIP	24374217
MIRT712639	hsa-miR-141-5p	HITS-CLIP	19536157
MIRT712638	hsa-miR-6748-3p	HITS-CLIP	19536157
MIRT712637	hsa-miR-4421	HITS-CLIP	19536157
MIRT712636	hsa-miR-5699-3p	HITS-CLIP	19536157
MIRT712635	hsa-miR-1199-5p	HITS-CLIP	19536157
MIRT712634	hsa-miR-6751-3p	HITS-CLIP	19536157
MIRT712633	hsa-miR-3182	HITS-CLIP	19536157
MIRT712632	hsa-miR-4778-3p	HITS-CLIP	19536157
MIRT712631	hsa-miR-1225-3p	HITS-CLIP	19536157
MIRT712630	hsa-miR-1233-3p	HITS-CLIP	19536157
MIRT712629	hsa-miR-6740-3p	HITS-CLIP	19536157
MIRT712628	hsa-miR-4303	HITS-CLIP	19536157
MIRT712627	hsa-miR-7152-5p	HITS-CLIP	19536157
MIRT712626	hsa-miR-4659a-3p	HITS-CLIP	19536157
MIRT712625	hsa-miR-4659b-3p	HITS-CLIP	19536157
MIRT572285	hsa-miR-3662	PAR-CLIP	20371350
MIRT572284	hsa-miR-3646	PAR-CLIP	20371350
MIRT572283	hsa-miR-888-5p	PAR-CLIP	20371350
MIRT572282	hsa-miR-3613-3p	PAR-CLIP	20371350
MIRT572281	hsa-miR-371b-5p	PAR-CLIP	20371350
MIRT572280	hsa-miR-373-5p	PAR-CLIP	20371350
MIRT572279	hsa-miR-616-5p	PAR-CLIP	20371350
MIRT572278	hsa-miR-7850-5p	PAR-CLIP	20371350
MIRT572277	hsa-miR-129-5p	PAR-CLIP	20371350
MIRT534708	hsa-miR-34c-3p	PAR-CLIP	21572407
MIRT534707	hsa-miR-3617-3p	PAR-CLIP	21572407
MIRT534705	hsa-miR-3065-3p	PAR-CLIP	21572407
MIRT534704	hsa-miR-383-3p	PAR-CLIP	21572407
MIRT534703	hsa-miR-9-5p	PAR-CLIP	21572407
MIRT534702	hsa-miR-5587-5p	PAR-CLIP	21572407
MIRT534700	hsa-miR-133a-3p	PAR-CLIP	21572407
MIRT534699	hsa-miR-133b	PAR-CLIP	21572407
MIRT534708	hsa-miR-34c-3p	PAR-CLIP	22012620
MIRT534707	hsa-miR-3617-3p	PAR-CLIP	22012620
MIRT534706	hsa-miR-6760-3p	PAR-CLIP	22012620
MIRT534705	hsa-miR-3065-3p	PAR-CLIP	22012620
MIRT534704	hsa-miR-383-3p	PAR-CLIP	22012620
MIRT534703	hsa-miR-9-5p	PAR-CLIP	22012620
MIRT534702	hsa-miR-5587-5p	PAR-CLIP	22012620
MIRT534701	hsa-miR-3912-5p	PAR-CLIP	22012620
MIRT534700	hsa-miR-133a-3p	PAR-CLIP	22012620
MIRT534699	hsa-miR-133b	PAR-CLIP	22012620
MIRT496130	hsa-miR-500b-3p	PAR-CLIP	22291592
MIRT496129	hsa-miR-8064	PAR-CLIP	22291592

MIM	HGNC	e!Ensembl
HGNC	N/A	HGNC

Interactions View interactions

KEGG Pathway	Reactome Pathway
Endocytosis	Budding and maturation of HIV virion
Necroptosis	Macroautophagy
	Endosomal Sorting Complex Required For Transport (ESCRT)
	HCMV Late Events
	Sealing of the nuclear envelope (NE) by ESCRT-III

Evidence Score: ★☆☆☆☆ Gene-disease association found in Text Mining only ★★☆☆☆ Found in Text Mining and Unknown/Other Associations ★★★☆☆ Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆ ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★ ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)

Phenotype Name	Clinical Significance	Source	Reference	Evidence Score
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
HEART FAILURE	—	GWAS catalog	36376295	★★★★★ ★★☆☆☆ Found in Text Mining + Unknown/Other Associations
MAJOR DEPRESSIVE DISORDER	—	GWAS catalog	30643256, 30718901, 34045744, 34924174, 37464041, 38177345	★★★★★ ★★☆☆☆ Found in Text Mining + Unknown/Other Associations
METABOLIC SYNDROME	—	GWAS catalog	39349817	★★★★★ ★★☆☆☆ Found in Text Mining + Unknown/Other Associations
NEUROTIC DISORDER	—	GWAS catalog	29942085, 30595370, 30643256	★★★★★ ★★☆☆☆ Found in Text Mining + Unknown/Other Associations
TYPE 2 DIABETES MELLITUS	—	GWAS catalog	39349817	★★★★★ ★★☆☆☆ Found in Text Mining + Unknown/Other Associations

Disease Name	Disease (Merged)	Source	PMID	Relationship Type	Evidence Score
Associations from Text Mining Disease associations identified through text mining Show/Hide Text Mining Associations (14)
Anxiety	Anxiety Disorder	GWASCAT_DG	29942085		★★★★★ ★☆☆☆☆ Found in Text Mining only
Arthritis Rheumatoid	Rheumatoid arthritis	Pubtator	37008939	Associate	★★★★★ ★☆☆☆☆ Found in Text Mining only
Atrial Fibrillation	Atrial fibrillation	Pubtator	37967346	Associate	★★★★★ ★☆☆☆☆ Found in Text Mining only
Breast Carcinoma	Breast Carcinoma	BEFREE	31541468		★★★★★ ★☆☆☆☆ Found in Text Mining only
Carcinoma Squamous Cell	Squamous cell carcinoma	Pubtator	35768804	Associate	★★★★★ ★☆☆☆☆ Found in Text Mining only
Down Syndrome	Down Syndrome	BEFREE	24166080		★★★★★ ★☆☆☆☆ Found in Text Mining only
Lung Neoplasms	Lung Neoplasms	LHGDN	16302002		★★★★★ ★☆☆☆☆ Found in Text Mining only
Major Depressive Disorder	Mental Depression	GWASCAT_DG	30718901		★★★★★ ★★☆☆☆ Found in Text Mining + Unknown/Other Associations
Malignant neoplasm of breast	Breast Cancer	BEFREE	31541468		★★★★★ ★☆☆☆☆ Found in Text Mining only
Malignant Neoplasms	Malignant Neoplasm	BEFREE	31541468		★★★★★ ★☆☆☆☆ Found in Text Mining only
Polyarteritis Nodosa	Polyarteritis Nodosa	BEFREE	31541468		★★★★★ ★☆☆☆☆ Found in Text Mining only
POLYARTERITIS NODOSA, CHILDHOOD-ONSET	Polyarteritis Nodosa	BEFREE	31541468		★★★★★ ★☆☆☆☆ Found in Text Mining only
Stroke	Stroke	Pubtator	37358014	Associate	★★★★★ ★☆☆☆☆ Found in Text Mining only
Triple Negative Breast Neoplasms	Triple Negative Breast Neoplasms	BEFREE	31541468		★★★★★ ★☆☆☆☆ Found in Text Mining only

Related Gene	Shared Disease Names	Shared Pathways	Shared Pathway Names	Shared Evidence Sources	Shared Evidence Names
CHMP2B	[]	7	["Endocytosis","Necroptosis","Budding and maturation of HIV virion","Macroautophagy","Endosomal Sorting Complex Required For Transport (ESCRT)","HCMV Late Events","Sealing of the nuclear envelope (NE) by ESCRT-III"]	0	[]
CHMP3	[]	7	["Endocytosis","Necroptosis","Budding and maturation of HIV virion","Macroautophagy","Endosomal Sorting Complex Required For Transport (ESCRT)","HCMV Late Events","Sealing of the nuclear envelope (NE) by ESCRT-III"]	1	["GWAS catalog (Heart failure)"]
CHMP4C	[]	7	["Endocytosis","Necroptosis","Budding and maturation of HIV virion","Macroautophagy","Endosomal Sorting Complex Required For Transport (ESCRT)","HCMV Late Events","Sealing of the nuclear envelope (NE) by ESCRT-III"]	0	[]
CHMP2A	[]	7	["Endocytosis","Necroptosis","Budding and maturation of HIV virion","Macroautophagy","Endosomal Sorting Complex Required For Transport (ESCRT)","HCMV Late Events","Sealing of the nuclear envelope (NE) by ESCRT-III"]	0	[]
CHMP6	[]	7	["Endocytosis","Necroptosis","Budding and maturation of HIV virion","Macroautophagy","Endosomal Sorting Complex Required For Transport (ESCRT)","HCMV Late Events","Sealing of the nuclear envelope (NE) by ESCRT-III"]	0	[]

RNF103-CHMP3 (RNF103-CHMP3 readthrough)

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