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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Idiopathic pulmonary fibrosis Interstitial lung disease
20 genes
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13 of 20 corroborated by 2+ sources
RTEL1(4), TERT(6), DEPTOR(1), MAPT(1), IVD(1), DSP(4), MUC5B(6), AKAP13(1), MUC5AC(1), SFTPC(5), SPDL1(1), STN1(4) +8 more
0.155 0.303 9.28e-31 2.88e-29 ✓ sig. —
Interstitial lung disease Pulmonary fibrosis
14 genes
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8 of 14 corroborated by 2+ sources
RTEL1(1), TERT(4), ARL17B(1), DSP(3), MUC5B(4), IL1RN(2), MUC5AC(1), SFTPC(4), SPDL1(1), FAM13A(3), LRRC34(1), SFTPA1(5) +2 more
0.088 0.212 1.46e-17 2.46e-16 ✓ sig. —
Interstitial lung disease Obstructive airway disease
9 genes
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6 of 9 corroborated by 2+ sources
RTEL1(1), TERT(4), DSP(2), HLA-DPB1(2), IL1RN(1), SFTPC(4), FAM13A(2), SFTPA1(5), TOLLIP(1)
0.057 0.136 3.88e-10 3.66e-9 ✓ sig. —
Interstitial lung disease Pulmonary surfactant metabolism dysfunction
3 genes
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2 of 3 corroborated by 2+ sources
BMP1(1), SFTPC(6), ABCA3(7)
0.043 0.500 1.49e-6 8.49e-6 ✓ sig. —
Interstitial lung disease Systemic scleroderma
3 genes
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1 of 3 corroborated by 2+ sources
RTEL1(2), HLA-DPB1(1), HLA-DPA1(1)
0.038 0.200 3.30e-5 1.52e-4 ✓ sig. —
Congenital phimosis epidermolysis bullosa, junctional 7, with interstitial lung disease and nephrotic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ITGA3(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
Respiratory distress with surfactant metabolism deficiency SFTPC-related interstitial lung disease
1 gene
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1 of 1 corroborated by 2+ sources
SFTPC(4)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
Chromosome 22q11.2 deletion syndrome interstitial lung disease due to ABCA3 deficiency
1 gene
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1 of 1 corroborated by 2+ sources
ABCA3(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 408 →
Congenital nephrotic syndrome, interstitial lung disease, epidermolysis bullosa syndrome Congenital phimosis
1 gene
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ITGA3(1)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
Congenital nephrotic syndrome, interstitial lung disease, epidermolysis bullosa syndrome epidermolysis bullosa, junctional 7, with interstitial lung disease and nephrotic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ITGA3(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
Autoimmune interstitial lung disease-arthritis syndrome Autoinflammation and autoimmunity, systemic, with immune dysregulation 1
1 gene
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1 of 1 corroborated by 2+ sources
COPA(5)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. —
Chromosome 16p11.2 deletion syndrome interstitial lung disease 1
1 gene
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1 of 1 corroborated by 2+ sources
SFTPA1(2)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. —
Pulmonary surfactant metabolism dysfunction SFTPC-related interstitial lung disease
1 gene
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1 of 1 corroborated by 2+ sources
SFTPC(6)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
interstitial lung disease due to ABCA3 deficiency Pulmonary surfactant metabolism dysfunction
1 gene
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1 of 1 corroborated by 2+ sources
ABCA3(4)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Hyperammonemia interstitial lung disease due to ABCA3 deficiency
1 gene
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1 of 1 corroborated by 2+ sources
ABCA3(2)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. Cluster 408 →
interstitial lung disease due to ABCA3 deficiency Pulmonary alveolar proteinosis
1 gene
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1 of 1 corroborated by 2+ sources
ABCA3(2)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Pulmonary alveolar proteinosis SFTPC-related interstitial lung disease
1 gene
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1 of 1 corroborated by 2+ sources
SFTPC(2)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Autoimmune interstitial lung disease-arthritis syndrome Cold autoinflammatory syndrome
1 gene
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1 of 1 corroborated by 2+ sources
NLRP12(4)
0.125 0.500 7.79e-4 1.41e-3 ✓ sig. —
interstitial lung disease due to ABCA3 deficiency Loeys-dietz syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ABCA3(2)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
epidermolysis bullosa, junctional 7, with interstitial lung disease and nephrotic syndrome Junctional epidermolysis bullosa
1 gene
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1 of 1 corroborated by 2+ sources
ITGA3(7)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
Congenital nephrotic syndrome, interstitial lung disease, epidermolysis bullosa syndrome Junctional epidermolysis bullosa
1 gene
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1 of 1 corroborated by 2+ sources
ITGA3(7)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
Osteogenesis imperfecta SFTPC-related interstitial lung disease
1 gene
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1 of 1 corroborated by 2+ sources
SFTPC(2)
0.025 1.000 2.53e-3 3.45e-3 ✓ sig. —
Bronchopulmonary dysplasia epidermolysis bullosa, junctional 7, with interstitial lung disease and nephrotic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ITGA3(2)
0.022 1.000 2.92e-3 3.88e-3 ✓ sig. —
Bronchopulmonary dysplasia Congenital nephrotic syndrome, interstitial lung disease, epidermolysis bullosa syndrome
1 gene
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ITGA3(1)
0.022 1.000 2.92e-3 3.88e-3 ✓ sig. —
Bronchopulmonary dysplasia interstitial lung disease 1
1 gene
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1 of 1 corroborated by 2+ sources
SFTPA1(2)
0.022 1.000 2.92e-3 3.88e-3 ✓ sig. —

Showing 25 of 48 matching pairs, sorted by significance (ascending). Click a column header to sort.