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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Congenital microtia Craniofacial abnormalities
1 gene
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1 of 1 corroborated by 2+ sources
PRKRA(2)
0.006 1.000 1.01e-2 1.15e-2 ✓ sig. —
Orofacial cleft Vertebral hypersegmentation with orofacial anomalies
1 gene
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1 of 1 corroborated by 2+ sources
GDF11(3)
0.006 1.000 1.01e-2 1.15e-2 ✓ sig. Cluster 63 →
Craniofacial abnormalities X-linked dominant hypophosphatemic rickets
1 gene
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1 of 1 corroborated by 2+ sources
PHEX(4)
0.006 1.000 1.01e-2 1.15e-2 ✓ sig. —
Craniofacial abnormalities X-linked hypophosphatemia
1 gene
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1 of 1 corroborated by 2+ sources
PHEX(3)
0.006 1.000 1.01e-2 1.15e-2 ✓ sig. —
Craniofacial abnormalities FADD-related immunodeficiency
1 gene
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1 of 1 corroborated by 2+ sources
FADD(3)
0.006 1.000 1.01e-2 1.15e-2 ✓ sig. —
Craniofacial abnormalities Frontonasal dysplasia, severe microphthalmia, severe facial clefting syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ALX1(6)
0.006 1.000 1.01e-2 1.15e-2 ✓ sig. —
Cleft lip and palate, craniofacial dysmorphism, congenital heart defect, hearing loss syndrome Orofacial cleft
1 gene
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1 of 1 corroborated by 2+ sources
HYAL2(3)
0.006 1.000 1.01e-2 1.15e-2 ✓ sig. —
Aicardi syndrome Large artery stroke
1 gene
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1 of 1 corroborated by 2+ sources
TEAD1(2)
0.013 0.500 1.01e-2 1.15e-2 ✓ sig. —
Large artery stroke propionic acidemia
1 gene
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1 of 1 corroborated by 2+ sources
PCCA(2)
0.013 0.500 1.01e-2 1.15e-2 ✓ sig. —
Bradyopsia Large artery stroke
1 gene
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1 of 1 corroborated by 2+ sources
RGS9(4)
0.013 0.500 1.01e-2 1.15e-2 ✓ sig. —
Large artery stroke Sveinsson chorioretinal atrophy
1 gene
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1 of 1 corroborated by 2+ sources
TEAD1(4)
0.013 0.500 1.01e-2 1.15e-2 ✓ sig. —
Cerebral atherosclerosis Posterior cortical atrophy
1 gene
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TENT5A(1)
0.040 0.083 1.01e-2 1.14e-2 ✓ sig. —
Congenital disorder of deglycosylation Otosclerosis
1 gene
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1 of 1 corroborated by 2+ sources
MAN2C1(5)
0.019 0.333 9.90e-3 1.12e-2 ✓ sig. —
Male infertility globozoospermia Substance-induced psychosis
1 gene
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1 of 1 corroborated by 2+ sources
PICK1(3)
0.038 0.111 9.90e-3 1.12e-2 ✓ sig. —
congenital microcephaly - severe encephalopathy - progressive cerebral atrophy syndrome Liver neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
ASNS(2)
0.007 1.000 9.87e-3 1.12e-2 ✓ sig. —
Liver neoplasms Retinitis pigmentosa, hearing loss, premature aging, short stature, facial dysmorphism syndrome
1 gene
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1 of 1 corroborated by 2+ sources
EXOSC2(5)
0.007 1.000 9.87e-3 1.12e-2 ✓ sig. Cluster 5 →
autosomal recessive osteopetrosis 8 Liver neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
SNX10(2)
0.007 1.000 9.87e-3 1.12e-2 ✓ sig. —
Bailey-Bloch congenital myopathy Liver neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
STAC3(2)
0.007 1.000 9.87e-3 1.12e-2 ✓ sig. —
Liver neoplasms Pulmonary agenesis
1 gene
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1 of 1 corroborated by 2+ sources
EFNB2(2)
0.007 1.000 9.87e-3 1.12e-2 ✓ sig. Cluster 5 →
Genetic generalized epilepsy Liver neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
TNK2(2)
0.007 1.000 9.87e-3 1.12e-2 ✓ sig. —
Liver neoplasms Native american myopathy
1 gene
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1 of 1 corroborated by 2+ sources
STAC3(3)
0.007 1.000 9.87e-3 1.12e-2 ✓ sig. —
Liver neoplasms ornithine aminotransferase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
OAT(2)
0.007 1.000 9.87e-3 1.12e-2 ✓ sig. —
Liver neoplasms xeroderma pigmentosum group A
1 gene
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1 of 1 corroborated by 2+ sources
XPA(2)
0.007 1.000 9.87e-3 1.12e-2 ✓ sig. —
Liver neoplasms xeroderma pigmentosum group C
1 gene
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1 of 1 corroborated by 2+ sources
XPC(2)
0.007 1.000 9.87e-3 1.12e-2 ✓ sig. —
Intellectual disability Ververi-brady syndrome
1 gene
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1 of 1 corroborated by 2+ sources
QRICH1(4)
0.013 0.500 9.85e-3 1.12e-2 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.