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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Hyperpituitarism Mosaic variegated aneuploidy
1 gene
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1 of 1 corroborated by 2+ sources
MAD1L1(5)
0.038 0.091 1.07e-2 1.20e-2 ✓ sig. —
amyotrophic lateral sclerosis type 9 Diabetic retinopathy
1 gene
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1 of 1 corroborated by 2+ sources
ANG(2)
0.006 1.000 1.07e-2 1.20e-2 ✓ sig. —
Congenital progressive bone marrow failure-b-cell immunodeficiency-skeletal dysplasia syndrome Diabetic retinopathy
1 gene
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1 of 1 corroborated by 2+ sources
MYSM1(3)
0.006 1.000 1.07e-2 1.20e-2 ✓ sig. —
Deafness-infertility syndrome nonsyndromic genetic hearing loss
1 gene
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1 of 1 corroborated by 2+ sources
STRC(6)
0.012 0.500 1.06e-2 1.20e-2 ✓ sig. Cluster 26 →
Chromosome 16p11.2 deletion syndrome Idiopathic pulmonary fibrosis
1 gene
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1 of 1 corroborated by 2+ sources
SFTPA1(2)
0.012 0.500 1.06e-2 1.20e-2 ✓ sig. —
Hemifacial microsomia Tooth agenesis
1 gene
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1 of 1 corroborated by 2+ sources
FOXI3(2)
0.022 0.250 1.06e-2 1.20e-2 ✓ sig. —
holocarboxylase synthetase deficiency Sarcoidosis
1 gene
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1 of 1 corroborated by 2+ sources
HLCS(2)
0.006 1.000 1.06e-2 1.20e-2 ✓ sig. —
neurodevelopmental disorder with microcephaly, seizures, and cortical atrophy Sarcoidosis
1 gene
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1 of 1 corroborated by 2+ sources
VARS1(2)
0.006 1.000 1.06e-2 1.20e-2 ✓ sig. —
neurodevelopmental disorder, nonprogressive, with spasticity and transient opisthotonus Sarcoidosis
1 gene
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1 of 1 corroborated by 2+ sources
TNR(2)
0.006 1.000 1.06e-2 1.20e-2 ✓ sig. —
combined immunodeficiency due to ZAP70 deficiency Sarcoidosis
1 gene
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1 of 1 corroborated by 2+ sources
ZAP70(2)
0.006 1.000 1.06e-2 1.20e-2 ✓ sig. —
primary ciliary dyskinesia 19 Sarcoidosis
1 gene
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1 of 1 corroborated by 2+ sources
DNAAF11(2)
0.006 1.000 1.06e-2 1.20e-2 ✓ sig. —
immunodeficiency, common variable, 6 Sarcoidosis
1 gene
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1 of 1 corroborated by 2+ sources
CD81(2)
0.006 1.000 1.06e-2 1.20e-2 ✓ sig. —
BBS12-related ciliopathy Sarcoidosis
1 gene
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1 of 1 corroborated by 2+ sources
BBS12(2)
0.006 1.000 1.06e-2 1.20e-2 ✓ sig. —
glaucoma, normal tension, susceptibility to Sarcoidosis
1 gene
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1 of 1 corroborated by 2+ sources
OPTN(2)
0.006 1.000 1.06e-2 1.20e-2 ✓ sig. —
amyotrophic lateral sclerosis type 12 Sarcoidosis
1 gene
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1 of 1 corroborated by 2+ sources
OPTN(2)
0.006 1.000 1.06e-2 1.20e-2 ✓ sig. —
amyotrophic lateral sclerosis type 23 Sarcoidosis
1 gene
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1 of 1 corroborated by 2+ sources
ANXA11(4)
0.006 1.000 1.06e-2 1.20e-2 ✓ sig. —
cardiomyopathy, dilated, 2e Sarcoidosis
1 gene
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1 of 1 corroborated by 2+ sources
JPH2(2)
0.006 1.000 1.06e-2 1.20e-2 ✓ sig. —
Brown-vialetto-van laere syndrome Obstructive sleep apnea syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SLC52A3(6)
0.012 0.500 1.05e-2 1.19e-2 ✓ sig. —
Aortic valve disease Carey-fineman-ziter syndrome
1 gene
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1 of 1 corroborated by 2+ sources
MYMK(6)
0.012 0.500 1.05e-2 1.19e-2 ✓ sig. —
Cerebellar, ocular, craniofacial, and genital syndrome Obstructive sleep apnea syndrome
1 gene
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1 of 1 corroborated by 2+ sources
NBEA(2)
0.012 0.500 1.05e-2 1.19e-2 ✓ sig. —
Kidney cancer Vulto-van silfhout-de vries syndrome
1 gene
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1 of 1 corroborated by 2+ sources
DLG4(2)
0.012 0.500 1.05e-2 1.19e-2 ✓ sig. —
Atrial flutter Wiskott-aldrich syndrome
1 gene
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1 of 1 corroborated by 2+ sources
WIPF1(6)
0.012 0.500 1.05e-2 1.19e-2 ✓ sig. —
Early onset epilepsy with developmental delay Psoriasis vulgaris
1 gene
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1 of 1 corroborated by 2+ sources
SETD1A(5)
0.018 0.333 1.05e-2 1.18e-2 ✓ sig. —
hypercholesterolemia, familial, 4 Upper aerodigestive tract neoplasm
1 gene
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1 of 1 corroborated by 2+ sources
LDLRAP1(2)
0.006 1.000 1.05e-2 1.18e-2 ✓ sig. —
autosomal recessive cerebellar ataxia Upper aerodigestive tract neoplasm
1 gene
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1 of 1 corroborated by 2+ sources
CWF19L1(2)
0.006 1.000 1.05e-2 1.18e-2 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.