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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
combined immunodeficiency due to moesin deficiency Oligoarticular juvenile idiopathic arthritis
1 gene
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1 of 1 corroborated by 2+ sources
MSN(2)
0.006 1.000 1.10e-2 1.24e-2 ✓ sig. —
Ischemic heart disease Prader-willi-like syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CPE(2)
0.006 1.000 1.10e-2 1.24e-2 ✓ sig. —
cardiomyopathy, dilated, 2k Oligoarticular juvenile idiopathic arthritis
1 gene
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1 of 1 corroborated by 2+ sources
MYZAP(2)
0.006 1.000 1.10e-2 1.24e-2 ✓ sig. Cluster 311 →
Aplasia cutis-enamel dysplasia syndrome Oligoarticular juvenile idiopathic arthritis
1 gene
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1 of 1 corroborated by 2+ sources
FOSL2(4)
0.006 1.000 1.10e-2 1.24e-2 ✓ sig. —
Congenital scalp aplasia cutis-enamel hypoplasia-developmental delay-intellectual disability syndrome Oligoarticular juvenile idiopathic arthritis
1 gene
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1 of 1 corroborated by 2+ sources
FOSL2(2)
0.006 1.000 1.10e-2 1.24e-2 ✓ sig. —
Cytosolic acetoacetyl-coa thiolase deficiency Ischemic heart disease
1 gene
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1 of 1 corroborated by 2+ sources
ACAT2(2)
0.006 1.000 1.10e-2 1.24e-2 ✓ sig. —
Claudication Ischemic heart disease
1 gene
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AGXT2(1)
0.006 1.000 1.10e-2 1.24e-2 ✓ sig. —
COG6-congenital disorder of glycosylation Oligoarticular juvenile idiopathic arthritis
1 gene
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1 of 1 corroborated by 2+ sources
COG6(2)
0.006 1.000 1.10e-2 1.24e-2 ✓ sig. Cluster 311 →
Beta-aminoisobutyric aciduria Ischemic heart disease
1 gene
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1 of 1 corroborated by 2+ sources
AGXT2(3)
0.006 1.000 1.10e-2 1.24e-2 ✓ sig. —
Iminoglycinuria Triple negative breast cancer
1 gene
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1 of 1 corroborated by 2+ sources
SLC6A18(2)
0.026 0.200 1.10e-2 1.24e-2 ✓ sig. —
Non-melanoma skin carcinoma pycnodysostosis
1 gene
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1 of 1 corroborated by 2+ sources
CTSK(2)
0.006 1.000 1.10e-2 1.24e-2 ✓ sig. —
Non-melanoma skin carcinoma Thrombocytopenia with anemia and myelofibrosis
1 gene
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1 of 1 corroborated by 2+ sources
MPIG6B(6)
0.006 1.000 1.10e-2 1.24e-2 ✓ sig. —
Combined malonic and methylmalonic acidemia Non-melanoma skin carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
ACSF3(4)
0.006 1.000 1.10e-2 1.24e-2 ✓ sig. —
Combined malonic and methylmalonic aciduria Non-melanoma skin carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
ACSF3(4)
0.006 1.000 1.10e-2 1.24e-2 ✓ sig. —
Congenital corneal opacity Non-melanoma skin carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
ZFHX4(2)
0.006 1.000 1.10e-2 1.24e-2 ✓ sig. —
Craniofaciocardiohepatic syndrome Non-melanoma skin carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
AMOTL1(2)
0.006 1.000 1.10e-2 1.24e-2 ✓ sig. —
hyper-IgE recurrent infection syndrome 3, autosomal recessive Non-melanoma skin carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
ZNF341(2)
0.006 1.000 1.10e-2 1.24e-2 ✓ sig. Cluster 29 →
Acromelic frontonasal dysostosis Non-melanoma skin carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
ZSWIM6(2)
0.006 1.000 1.10e-2 1.24e-2 ✓ sig. Cluster 29 →
Autoinflammatory syndrome with pyogenic bacterial infection and amylopectinosis Cardiomegaly
1 gene
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1 of 1 corroborated by 2+ sources
RBCK1(3)
0.012 0.500 1.09e-2 1.23e-2 ✓ sig. —
complex hereditary spastic paraplegia Polyneuropathy
1 gene
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1 of 1 corroborated by 2+ sources
GBA2(2)
0.032 0.143 1.09e-2 1.22e-2 ✓ sig. —
Bone neoplasms Machado-joseph disease
1 gene
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THSD7B(1)
0.034 0.125 1.09e-2 1.22e-2 ✓ sig. —
membranoproliferative glomerulonephritis Nephrotic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
DGKE(4)
0.006 1.000 1.08e-2 1.22e-2 ✓ sig. —
Mineralocortocoid excess Nephrotic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
HSD11B2(7)
0.006 1.000 1.08e-2 1.22e-2 ✓ sig. Cluster 30 →
Nephrotic syndrome Thiamine-responsive encephalopathy
1 gene
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1 of 1 corroborated by 2+ sources
SLC19A3(3)
0.006 1.000 1.08e-2 1.22e-2 ✓ sig. —
Nephrotic syndrome Woolly hair-palmoplantar keratoderma syndrome
1 gene
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1 of 1 corroborated by 2+ sources
KANK2(4)
0.006 1.000 1.08e-2 1.22e-2 ✓ sig. Cluster 30 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.