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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Cervicitis Colonic neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
IL32(2)
0.005 1.000 1.32e-2 1.47e-2 ✓ sig. —
ciliary dyskinesia, primary, 54 Post-traumatic stress disorder
1 gene
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1 of 1 corroborated by 2+ sources
CFAP54(2)
0.005 1.000 1.32e-2 1.47e-2 ✓ sig. —
Cleft palate psychomotor retardation distinctive facial features Colonic neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
KDM1A(3)
0.005 1.000 1.32e-2 1.47e-2 ✓ sig. —
CNGA1-related retinopathy Colonic neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
CNGA1(2)
0.005 1.000 1.32e-2 1.47e-2 ✓ sig. —
Iga nephropathy leukemia, acute lymphoblastic, susceptibility to, 3
1 gene
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1 of 1 corroborated by 2+ sources
PAX5(2)
0.005 1.000 1.32e-2 1.47e-2 ✓ sig. —
Iga nephropathy MPDU1-congenital disorder of glycosylation
1 gene
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1 of 1 corroborated by 2+ sources
MPDU1(2)
0.005 1.000 1.32e-2 1.47e-2 ✓ sig. —
Colonic neoplasms mucopolysaccharidosis type 2
1 gene
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1 of 1 corroborated by 2+ sources
IDS(2)
0.005 1.000 1.32e-2 1.47e-2 ✓ sig. —
multiple endocrine neoplasia type 1 Post-traumatic stress disorder
1 gene
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1 of 1 corroborated by 2+ sources
MEN1(2)
0.005 1.000 1.32e-2 1.47e-2 ✓ sig. —
21q22.11q22.12 microdeletion syndrome Iga nephropathy
1 gene
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1 of 1 corroborated by 2+ sources
KIF15(2)
0.005 1.000 1.32e-2 1.47e-2 ✓ sig. —
Acantholytic blistering of oral and laryngeal mucosa Colonic neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
DSG3(4)
0.005 1.000 1.32e-2 1.47e-2 ✓ sig. Cluster 5 →
Adenylosuccinate lyase deficiency Colonic neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
ADSL(2)
0.005 1.000 1.32e-2 1.47e-2 ✓ sig. —
Alpha-mannosidosis Iga nephropathy
1 gene
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1 of 1 corroborated by 2+ sources
MAN2B1(4)
0.005 1.000 1.32e-2 1.47e-2 ✓ sig. —
Autoinflammatory disease, systemic, with vasculitis Iga nephropathy
1 gene
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1 of 1 corroborated by 2+ sources
LYN(4)
0.005 1.000 1.32e-2 1.47e-2 ✓ sig. Cluster 28 →
autosomal recessive osteopetrosis 6 Post-traumatic stress disorder
1 gene
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1 of 1 corroborated by 2+ sources
PLEKHM1(2)
0.005 1.000 1.32e-2 1.47e-2 ✓ sig. —
autosomal recessive spinocerebellar ataxia 10 Post-traumatic stress disorder
1 gene
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1 of 1 corroborated by 2+ sources
ANO10(2)
0.005 1.000 1.32e-2 1.47e-2 ✓ sig. —
Colonic neoplasms Congenital external auditory canal atresia
1 gene
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1 of 1 corroborated by 2+ sources
TSHZ1(2)
0.005 1.000 1.32e-2 1.47e-2 ✓ sig. —
Autoimmune disease combined immunodeficiency due to OX40 deficiency
1 gene
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1 of 1 corroborated by 2+ sources
TNFRSF4(2)
0.005 1.000 1.31e-2 1.46e-2 ✓ sig. —
Autoimmune disease syndromic multisystem autoimmune disease due to ITCH deficiency
1 gene
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1 of 1 corroborated by 2+ sources
ITCH(3)
0.005 1.000 1.31e-2 1.46e-2 ✓ sig. —
Autoimmune disease Autoinflammation and autoimmunity, systemic, with immune dysregulation 1
1 gene
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COPA(1)
0.005 1.000 1.31e-2 1.46e-2 ✓ sig. —
Autoimmune disease Autoinflammation with pulmonary and cutaneous vasculitis
1 gene
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1 of 1 corroborated by 2+ sources
HCK(5)
0.005 1.000 1.31e-2 1.46e-2 ✓ sig. Cluster 39 →
Autoimmune disease Autoinflammation, immune dysregulation, and eosinophilia
1 gene
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1 of 1 corroborated by 2+ sources
JAK1(5)
0.005 1.000 1.31e-2 1.46e-2 ✓ sig. —
Autoimmune disease autosomal systemic lupus erythematosus type 16
1 gene
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1 of 1 corroborated by 2+ sources
0.005 1.000 1.31e-2 1.46e-2 ✓ sig. —
Ataxia, spastic, autosomal recessive Hereditary spastic paraplegia
1 gene
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1 of 1 corroborated by 2+ sources
KIF1C(2)
0.010 0.500 1.31e-2 1.46e-2 ✓ sig. —
Congenital cataract hearing loss developmental delay syndrome Hereditary spastic paraplegia
1 gene
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1 of 1 corroborated by 2+ sources
SLC33A1(2)
0.010 0.500 1.31e-2 1.46e-2 ✓ sig. —
Cardioembolic stroke Wiskott-aldrich syndrome
1 gene
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1 of 1 corroborated by 2+ sources
WIPF1(6)
0.010 0.500 1.31e-2 1.46e-2 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.