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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Early-onset myopathy-areflexia-respiratory distress-dysphagia syndrome Psychiatric disorders
1 gene
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1 of 1 corroborated by 2+ sources
MEGF10(3)
0.005 1.000 1.42e-2 1.58e-2 ✓ sig. —
cardiomyopathy, dilated, 2f Psychiatric disorders
1 gene
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1 of 1 corroborated by 2+ sources
BAG5(2)
0.005 1.000 1.42e-2 1.58e-2 ✓ sig. Cluster 69 →
KIZ-related retinopathy Psychiatric disorders
1 gene
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1 of 1 corroborated by 2+ sources
KIZ(2)
0.005 1.000 1.42e-2 1.58e-2 ✓ sig. —
combined immunodeficiency due to CD3gamma deficiency Psychiatric disorders
1 gene
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1 of 1 corroborated by 2+ sources
CD3G(2)
0.005 1.000 1.42e-2 1.58e-2 ✓ sig. —
Congenital hereditary facial paralysis with variable hearing loss syndrome Psychiatric disorders
1 gene
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1 of 1 corroborated by 2+ sources
HOXB1(2)
0.005 1.000 1.42e-2 1.58e-2 ✓ sig. —
neuropathy, hereditary sensory and autonomic, type 1C Psychiatric disorders
1 gene
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1 of 1 corroborated by 2+ sources
SPTLC2(2)
0.005 1.000 1.42e-2 1.58e-2 ✓ sig. —
Chromosomal disorder Clear cell renal cell carcinoma
1 gene
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GRB10(1)
0.017 0.250 1.42e-2 1.58e-2 ✓ sig. —
friedreich ataxia Gastric cancer
1 gene
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1 of 1 corroborated by 2+ sources
FXN(2)
0.005 1.000 1.42e-2 1.58e-2 ✓ sig. Cluster 67 →
Gastric cancer thrombotic disease
1 gene
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1 of 1 corroborated by 2+ sources
MAST2(2)
0.005 1.000 1.42e-2 1.58e-2 ✓ sig. Cluster 67 →
Gastric cancer Vici syndrome
1 gene
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1 of 1 corroborated by 2+ sources
EPG5(5)
0.005 1.000 1.42e-2 1.58e-2 ✓ sig. —
Gastric cancer microcornea-myopic chorioretinal atrophy
1 gene
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1 of 1 corroborated by 2+ sources
0.005 1.000 1.42e-2 1.58e-2 ✓ sig. —
autoimmune lymphoproliferative syndrome type 2A Gastric cancer
1 gene
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1 of 1 corroborated by 2+ sources
CASP10(3)
0.005 1.000 1.42e-2 1.58e-2 ✓ sig. —
ehlers-danlos syndrome, musculocontractural type 1 Gastric cancer
1 gene
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1 of 1 corroborated by 2+ sources
CHST14(2)
0.005 1.000 1.42e-2 1.58e-2 ✓ sig. —
Cardiofacio-neurodevelopmental syndrome Gastric cancer
1 gene
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1 of 1 corroborated by 2+ sources
CCDC32(5)
0.005 1.000 1.42e-2 1.58e-2 ✓ sig. Cluster 67 →
Neuronal ceroid lipofuscinosis non-syndromic X-linked intellectual disability
1 gene
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1 of 1 corroborated by 2+ sources
SYP(3)
0.026 0.143 1.40e-2 1.56e-2 ✓ sig. —
Cortical development malformation Spermatogenic failure, x-linked
1 gene
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1 of 1 corroborated by 2+ sources
CFAP47(5)
0.029 0.125 1.39e-2 1.55e-2 ✓ sig. —
Complex regional pain syndrome Sezary syndrome
1 gene
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1 of 1 corroborated by 2+ sources
RPS6KA1(2)
0.029 0.125 1.39e-2 1.55e-2 ✓ sig. —
Leigh syndrome Sandhoff disease
1 gene
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1 of 1 corroborated by 2+ sources
GFM2(2)
0.009 0.500 1.39e-2 1.54e-2 ✓ sig. Cluster 50 →
Intellectual developmental disorder dysmorphic ptosis Male infertility single gene azoospermia
1 gene
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1 of 1 corroborated by 2+ sources
RPL10L(2)
0.009 0.500 1.39e-2 1.54e-2 ✓ sig. —
Diencephalic mesencephalic junction dysplasia Motor neuron disease
1 gene
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1 of 1 corroborated by 2+ sources
GSX2(4)
0.014 0.333 1.38e-2 1.53e-2 ✓ sig. —
Microcephaly Thiamine metabolism dysfunction syndrome
1 gene
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1 of 1 corroborated by 2+ sources
0.009 0.500 1.37e-2 1.53e-2 ✓ sig. —
Central nervous system malformation Microcephaly
1 gene
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1 of 1 corroborated by 2+ sources
LMNB2(5)
0.009 0.500 1.37e-2 1.53e-2 ✓ sig. —
Bipolar depression Intellectual developmental disorder seizures speech
1 gene
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NTNG2(1)
0.009 0.500 1.36e-2 1.51e-2 ✓ sig. —
Brain ischemia Cystic fibrosis-related diabetes
1 gene
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1 of 1 corroborated by 2+ sources
CEBPB(3)
0.014 0.333 1.36e-2 1.51e-2 ✓ sig. —
Growth disorder Tessadori-van haaften neurodevelopmental syndrome
1 gene
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1 of 1 corroborated by 2+ sources
H4C3(5)
0.024 0.167 1.36e-2 1.51e-2 ✓ sig. Cluster 27 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.