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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Mitochondrial disease optic atrophy 11
1 gene
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1 of 1 corroborated by 2+ sources
YME1L1(3)
0.004 1.000 1.57e-2 1.73e-2 ✓ sig. —
Mitochondrial disease optic atrophy 9
1 gene
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1 of 1 corroborated by 2+ sources
ACO2(3)
0.004 1.000 1.57e-2 1.73e-2 ✓ sig. —
Mitochondrial disease Mitochondrial encephalocardiomyopathy
1 gene
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1 of 1 corroborated by 2+ sources
TMEM70(3)
0.004 1.000 1.57e-2 1.73e-2 ✓ sig. Cluster 50 →
Early-onset dystonia with spastic paraplegia Mitochondrial disease
1 gene
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1 of 1 corroborated by 2+ sources
ATP5MC3(5)
0.004 1.000 1.57e-2 1.73e-2 ✓ sig. Cluster 50 →
Combined oxidative phosphorylation defect Mitochondrial disease
1 gene
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1 of 1 corroborated by 2+ sources
WARS2(3)
0.004 1.000 1.57e-2 1.73e-2 ✓ sig. —
hyperphosphatasia with intellectual disability syndrome 6 Mitochondrial disease
1 gene
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1 of 1 corroborated by 2+ sources
PIGY(2)
0.004 1.000 1.57e-2 1.73e-2 ✓ sig. —
Male infertility globozoospermia Teratozoospermia
1 gene
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1 of 1 corroborated by 2+ sources
SPATA16(2)
0.028 0.111 1.57e-2 1.73e-2 ✓ sig. —
lymphoproliferative syndrome 1 Respiratory system disease
1 gene
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1 of 1 corroborated by 2+ sources
ITK(2)
0.004 1.000 1.57e-2 1.73e-2 ✓ sig. —
Autoinflammation with episodic fever and immune dysregulation Respiratory system disease
1 gene
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1 of 1 corroborated by 2+ sources
SHARPIN(4)
0.004 1.000 1.57e-2 1.73e-2 ✓ sig. —
Axonal neuropathy with neuromyotonia Respiratory system disease
1 gene
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1 of 1 corroborated by 2+ sources
HINT1(4)
0.004 1.000 1.57e-2 1.73e-2 ✓ sig. —
Catifa syndrome Respiratory system disease
1 gene
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1 of 1 corroborated by 2+ sources
RIC1(5)
0.004 1.000 1.57e-2 1.73e-2 ✓ sig. —
ITPKB deficiency Respiratory system disease
1 gene
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1 of 1 corroborated by 2+ sources
ITPKB(2)
0.004 1.000 1.57e-2 1.73e-2 ✓ sig. —
optic atrophy 9 Respiratory system disease
1 gene
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1 of 1 corroborated by 2+ sources
ACO2(2)
0.004 1.000 1.57e-2 1.73e-2 ✓ sig. —
Aortic valve stenosis Spastic paraplegia
1 gene
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1 of 1 corroborated by 2+ sources
HACE1(3)
0.008 0.500 1.55e-2 1.71e-2 ✓ sig. —
Congenital cataract hearing loss developmental delay syndrome Spastic paraplegia
1 gene
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1 of 1 corroborated by 2+ sources
SLC33A1(4)
0.008 0.500 1.55e-2 1.71e-2 ✓ sig. —
Brain injuries Cystic fibrosis-related diabetes
1 gene
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1 of 1 corroborated by 2+ sources
CEBPB(2)
0.012 0.333 1.55e-2 1.71e-2 ✓ sig. —
Complex regional pain syndrome Congenital nasopharyngeal atresia
1 gene
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1 of 1 corroborated by 2+ sources
SPAG1(2)
0.026 0.125 1.55e-2 1.71e-2 ✓ sig. —
Atherosclerosis Childhood kidney wilms tumor
1 gene
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1 of 1 corroborated by 2+ sources
TRIM28(3)
0.008 0.500 1.54e-2 1.70e-2 ✓ sig. —
Developmental delay with or without intellectual or behavioral abnormalities Isolated sensorineural deafness
1 gene
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1 of 1 corroborated by 2+ sources
TRRAP(4)
0.008 0.500 1.54e-2 1.70e-2 ✓ sig. —
Developmental delay with or without intellectual or behavioral abnormalities Nonsyndromic hearing loss
1 gene
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1 of 1 corroborated by 2+ sources
TRRAP(4)
0.008 0.500 1.53e-2 1.69e-2 ✓ sig. —
Deafness-infertility syndrome Nonsyndromic hearing loss
1 gene
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1 of 1 corroborated by 2+ sources
STRC(6)
0.008 0.500 1.53e-2 1.69e-2 ✓ sig. Cluster 26 →
Biliary tract cancer Lafora disease
1 gene
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1 of 1 corroborated by 2+ sources
NHLRC1(5)
0.008 0.500 1.53e-2 1.69e-2 ✓ sig. —
Glaucoma Inflammatory demyelinating polyneuropathy
1 gene
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CNBD1(1)
0.004 1.000 1.52e-2 1.68e-2 ✓ sig. —
jalili syndrome Obsessive-compulsive disorder
1 gene
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1 of 1 corroborated by 2+ sources
CNNM4(2)
0.004 1.000 1.52e-2 1.68e-2 ✓ sig. —
KIZ-related retinopathy Obsessive-compulsive disorder
1 gene
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1 of 1 corroborated by 2+ sources
KIZ(2)
0.004 1.000 1.52e-2 1.68e-2 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.