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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Bilateral microtia with deafness and cleft palate syndrome Stomach neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
HOXA2(5)
0.003 1.000 1.99e-2 2.16e-2 ✓ sig. —
Congenital alpha-fetoprotein deficiency Stomach neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
AFP(3)
0.003 1.000 1.99e-2 2.16e-2 ✓ sig. —
autoimmune lymphoproliferative syndrome type 2A Stomach neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
CASP10(2)
0.003 1.000 1.99e-2 2.16e-2 ✓ sig. —
autosomal dominant combined immunodeficiency due to ERBIN deficiency Uterine fibroid
1 gene
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1 of 1 corroborated by 2+ sources
ERBIN(2)
0.003 1.000 1.99e-2 2.16e-2 ✓ sig. —
Autosomal recessive hypomyelinating leukodystrophy Stomach neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
HIKESHI(4)
0.003 1.000 1.99e-2 2.16e-2 ✓ sig. —
extraoral halitosis due to methanethiol oxidase deficiency Stomach neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
0.003 1.000 1.99e-2 2.16e-2 ✓ sig. Cluster 5 →
Combined immunodeficiency disease Epidermodysplasia verruciformis
1 gene
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MST1(1)
0.020 0.143 1.98e-2 2.16e-2 ✓ sig. —
Fructokinase deficiency Liver neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
CGREF1(2)
0.006 0.500 1.96e-2 2.14e-2 ✓ sig. —
Birt-hogg-dube syndrome Liver neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
FLCN(7)
0.006 0.500 1.96e-2 2.14e-2 ✓ sig. —
Astrocytoma cardiomyopathy, dilated, 2k
1 gene
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1 of 1 corroborated by 2+ sources
MYZAP(2)
0.003 1.000 1.95e-2 2.13e-2 ✓ sig. —
Astrocytoma retinitis pigmentosa 86
1 gene
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1 of 1 corroborated by 2+ sources
0.003 1.000 1.95e-2 2.13e-2 ✓ sig. —
Astrocytoma Rhizomelic limb shortening with dysmorphic features
1 gene
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1 of 1 corroborated by 2+ sources
PKDCC(5)
0.003 1.000 1.95e-2 2.13e-2 ✓ sig. —
Astrocytoma Salt and pepper developmental regression syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ST3GAL5(2)
0.003 1.000 1.95e-2 2.13e-2 ✓ sig. —
Astrocytoma scalp-ear-nipple syndrome
1 gene
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1 of 1 corroborated by 2+ sources
KCTD1(2)
0.003 1.000 1.95e-2 2.13e-2 ✓ sig. —
Astrocytoma fibrodysplasia ossificans progressiva
1 gene
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1 of 1 corroborated by 2+ sources
ACVR1(2)
0.003 1.000 1.95e-2 2.13e-2 ✓ sig. —
Astrocytoma GM3 synthase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
ST3GAL5(2)
0.003 1.000 1.95e-2 2.13e-2 ✓ sig. —
Astrocytoma thrombocytopenia 11 with multiple congenital anomalies and dysmorphic facies
1 gene
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1 of 1 corroborated by 2+ sources
RAP1B(2)
0.003 1.000 1.95e-2 2.13e-2 ✓ sig. Cluster 284 →
Astrocytoma Helsmoortel-van der aa syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ADNP(2)
0.003 1.000 1.95e-2 2.13e-2 ✓ sig. —
Astrocytoma hypomyelinating leukodystrophy 5
1 gene
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1 of 1 corroborated by 2+ sources
HYCC1(2)
0.003 1.000 1.95e-2 2.13e-2 ✓ sig. —
Astrocytoma Compton-north congenital myopathy
1 gene
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1 of 1 corroborated by 2+ sources
CNTN1(2)
0.003 1.000 1.95e-2 2.13e-2 ✓ sig. —
Astrocytoma Congenital lethal myopathy
1 gene
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1 of 1 corroborated by 2+ sources
CNTN1(3)
0.003 1.000 1.95e-2 2.13e-2 ✓ sig. —
Neuroblastoma Ocular anomalies with axonal neuropathy and developmental delay
1 gene
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1 of 1 corroborated by 2+ sources
CHD5(2)
0.007 0.500 1.95e-2 2.13e-2 ✓ sig. —
Malonic aciduria Neuroblastoma
1 gene
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1 of 1 corroborated by 2+ sources
MLYCD(8)
0.007 0.500 1.95e-2 2.13e-2 ✓ sig. —
Congenital small-platelet thrombocytopenia Mood disorder
1 gene
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1 of 1 corroborated by 2+ sources
FYB1(3)
0.003 1.000 1.94e-2 2.11e-2 ✓ sig. —
Mood disorder pseudohypoaldosteronism type 2E
1 gene
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1 of 1 corroborated by 2+ sources
CUL3(2)
0.003 1.000 1.94e-2 2.11e-2 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.