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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Aicardi syndrome Liver disease
1 gene
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1 of 1 corroborated by 2+ sources
TEAD1(2)
0.006 0.500 2.03e-2 2.21e-2 ✓ sig. —
Liver disease Sveinsson chorioretinal atrophy
1 gene
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1 of 1 corroborated by 2+ sources
TEAD1(4)
0.006 0.500 2.03e-2 2.21e-2 ✓ sig. —
Liver disease Primary microcephaly-mild intellectual disability-young-onset diabetes syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TRMT10A(3)
0.006 0.500 2.03e-2 2.21e-2 ✓ sig. —
Cole-carpenter syndrome Spinocerebellar ataxia
1 gene
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1 of 1 corroborated by 2+ sources
P4HB(6)
0.009 0.333 2.01e-2 2.19e-2 ✓ sig. —
3m syndrome Spinocerebellar ataxia
1 gene
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1 of 1 corroborated by 2+ sources
CCDC8(4)
0.009 0.333 2.01e-2 2.19e-2 ✓ sig. Cluster 79 →
Liver failure Tessadori-van haaften neurodevelopmental syndrome
1 gene
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1 of 1 corroborated by 2+ sources
H4C1(2)
0.017 0.167 2.01e-2 2.19e-2 ✓ sig. —
Retrograde amnesia Stomach neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
PREP(2)
0.003 1.000 1.99e-2 2.16e-2 ✓ sig. —
primordial dwarfism-immunodeficiency-lipodystrophy syndrome Uterine fibroid
1 gene
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1 of 1 corroborated by 2+ sources
PRIM1(2)
0.003 1.000 1.99e-2 2.16e-2 ✓ sig. —
leukodystrophy, hypomyelinating, 21 Stomach neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
POLR3K(2)
0.003 1.000 1.99e-2 2.16e-2 ✓ sig. —
macrothrombocytopenia-lymphedema-developmental delay-facial dysmorphism-camptodactyly syndrome Uterine fibroid
1 gene
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1 of 1 corroborated by 2+ sources
CDC42(2)
0.003 1.000 1.99e-2 2.16e-2 ✓ sig. —
Microtia Stomach neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
HOXA2(3)
0.003 1.000 1.99e-2 2.16e-2 ✓ sig. —
mitochondrial short-chain enoyl-coa hydratase 1 deficiency Stomach neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
ECHS1(2)
0.003 1.000 1.99e-2 2.16e-2 ✓ sig. —
Cerebellar ataxia, brain abnormalities, and cardiac conduction defects Stomach neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
EXOSC5(5)
0.003 1.000 1.99e-2 2.16e-2 ✓ sig. Cluster 5 →
Cerebrocostomandibular syndrome Stomach neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
SNRPB(6)
0.003 1.000 1.99e-2 2.16e-2 ✓ sig. —
dyskeratosis congenita, autosomal recessive 3 Uterine fibroid
1 gene
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1 of 1 corroborated by 2+ sources
WRAP53(2)
0.003 1.000 1.99e-2 2.16e-2 ✓ sig. —
neurodevelopmental disorder with hypotonia and variable intellectual and behavioral abnormalities Uterine fibroid
1 gene
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1 of 1 corroborated by 2+ sources
POLR2A(2)
0.003 1.000 1.99e-2 2.16e-2 ✓ sig. —
Stomach neoplasms White-kernohan syndrome
1 gene
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1 of 1 corroborated by 2+ sources
DDB1(5)
0.003 1.000 1.99e-2 2.16e-2 ✓ sig. —
Anterior pituitary function deficiency with variable immunodeficiency Uterine fibroid
1 gene
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1 of 1 corroborated by 2+ sources
NFKB2(3)
0.003 1.000 1.99e-2 2.16e-2 ✓ sig. —
immunodeficiency, common variable, 10 Uterine fibroid
1 gene
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1 of 1 corroborated by 2+ sources
NFKB2(2)
0.003 1.000 1.99e-2 2.16e-2 ✓ sig. —
Isobutyryl-coa dehydrogenase deficiency Stomach neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
ACAD8(3)
0.003 1.000 1.99e-2 2.16e-2 ✓ sig. Cluster 5 →
KCND2-related neurodevelopmental disorder with or without seizures Uterine fibroid
1 gene
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1 of 1 corroborated by 2+ sources
KCND2(2)
0.003 1.000 1.99e-2 2.16e-2 ✓ sig. —
Hereditary arterial and articular multiple calcification syndrome Stomach neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
NT5E(4)
0.003 1.000 1.99e-2 2.16e-2 ✓ sig. —
hereditary fructose intolerance Stomach neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
ALDOB(2)
0.003 1.000 1.99e-2 2.16e-2 ✓ sig. —
hypomyelinating leukodystrophy 13 Stomach neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
HIKESHI(2)
0.003 1.000 1.99e-2 2.16e-2 ✓ sig. —
IDH3B-related retinopathy Stomach neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
IDH3B(2)
0.003 1.000 1.99e-2 2.16e-2 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.