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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Hemoglobin c beta thalassemia Hemoglobinopathy
1 gene
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1 of 1 corroborated by 2+ sources
HBB(3)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 19 →
Hemoglobin d disease Hemoglobinopathy
1 gene
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1 of 1 corroborated by 2+ sources
HBB(3)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 19 →
Hemophilia b carriers thrombophilia, X-linked, due to factor 9 defect
1 gene
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1 of 1 corroborated by 2+ sources
F9(3)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
hereditary hyperferritinemia with congenital cataracts neuroferritinopathy
1 gene
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FTL(1)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
hermansky-pudlak syndrome 10 Ocular albinism with sensorineural deafness
1 gene
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1 of 1 corroborated by 2+ sources
AP3D1(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 414 →
heyn-sproul-jackson syndrome Microcephalic dwarfism
1 gene
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1 of 1 corroborated by 2+ sources
DNMT3A(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 268 →
heyn-sproul-jackson syndrome Tatton-Brown-Rahman overgrowth syndrome
1 gene
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DNMT3A(1)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 268 →
Hmg-coa lyase deficiency Hydroxymethylglutaryl-coa lyase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
HMGCL(4)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
holoprosencephaly 3 Preaxial polydactyly with upper back hypertrichosis
1 gene
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1 of 1 corroborated by 2+ sources
SHH(3)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 232 →
holoprosencephaly 3 Skeletal system disorder
1 gene
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1 of 1 corroborated by 2+ sources
SHH(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 232 →
homocystinuria due to methylene tetrahydrofolate reductase deficiency Microvascular angina
1 gene
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1 of 1 corroborated by 2+ sources
MTHFR(3)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 204 →
Hyaluronoglucosaminidase deficiency mucopolysaccharidosis type 9
1 gene
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1 of 1 corroborated by 2+ sources
HYAL1(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
hyper-IgE recurrent infection syndrome 1, autosomal dominant Hyper-ige syndrome
1 gene
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1 of 1 corroborated by 2+ sources
STAT3(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 205 →
hyper-IgE recurrent infection syndrome 1, autosomal dominant Lymphoproliferative disorder of natural killer cells
1 gene
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1 of 1 corroborated by 2+ sources
STAT3(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 205 →
hyper-IgE recurrent infection syndrome 1, autosomal dominant STAT3-related early-onset multisystem autoimmune disease
1 gene
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STAT3(1)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 205 →
hyper-IgE recurrent infection syndrome 5, autosomal recessive Interleukin 6 quantitative trait
1 gene
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1 of 1 corroborated by 2+ sources
IL6R(3)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
Hyper-ige syndrome Lymphoproliferative disorder of natural killer cells
1 gene
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STAT3(1)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 205 →
Hyper-ige syndrome STAT3-related early-onset multisystem autoimmune disease
1 gene
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1 of 1 corroborated by 2+ sources
STAT3(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 205 →
Hypergammaglobulinemia hypoproteinemia, hypercatabolic
1 gene
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1 of 1 corroborated by 2+ sources
B2M(3)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 228 →
Hyperinflammatory lymphoproliferative immunodeficiency immunodeficiency 72 with autoinflammation
1 gene
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1 of 1 corroborated by 2+ sources
NCKAP1L(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
hyperinsulinemic hypoglycemia with polycystic kidney disease PMM2-congenital disorder of glycosylation
1 gene
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PMM2(1)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
hyperlysinemia Saccharopinuria
1 gene
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1 of 1 corroborated by 2+ sources
AASS(3)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
hyperparathyroidism 2 with jaw tumors Parathyroid carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
CDC73(4)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
hyperparathyroidism 2 with jaw tumors Parathyroid neoplasm
1 gene
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1 of 1 corroborated by 2+ sources
CDC73(3)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
hypertrichotic osteochondrodysplasia Cantu type Intellectual disability and myopathy syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ABCC9(5)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 234 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.