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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
amyloidosis, hereditary systemic 6 Hypergammaglobulinemia
1 gene
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1 of 1 corroborated by 2+ sources
B2M(3)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 228 →
amyloidosis, hereditary systemic 6 hypoproteinemia, hypercatabolic
1 gene
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B2M(1)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 228 →
amyotrophic lateral sclerosis type 11 Bilateral parasagittal parieto-occipital polymicrogyria
1 gene
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1 of 1 corroborated by 2+ sources
FIG4(5)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 103 →
amyotrophic lateral sclerosis type 12 glaucoma, normal tension, susceptibility to
1 gene
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OPTN(1)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
amyotrophic lateral sclerosis type 22 autosomal dominant macrothrombocytopenia
1 gene
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TUBA4A(1)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
amyotrophic lateral sclerosis, susceptibility to, 25 inherited neurodegenerative disorder
1 gene
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KIF5A(1)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
Analbuminemia Blood protein disorder
1 gene
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1 of 1 corroborated by 2+ sources
ALB(3)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 372 →
Analbuminemia Congenital analbuminemia
1 gene
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1 of 1 corroborated by 2+ sources
ALB(6)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 372 →
Analbuminemia Dysalbuminemic hyperthyroxinemia
1 gene
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1 of 1 corroborated by 2+ sources
ALB(3)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 372 →
Anaphylatoxin inactivator deficiency Carboxypeptidase n deficiency
1 gene
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1 of 1 corroborated by 2+ sources
CPN1(5)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
Anaplastic oligoastrocytoma Gemistocytic astrocytoma
1 gene
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IDH2(1)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 304 →
anemia, nonspherocytic hemolytic, due to G6PD deficiency G6PD deficiency
1 gene
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G6PD(1)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 87 →
Anemia, x-linked Thrombocytopenia with dyserythropoietic anemia
1 gene
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1 of 1 corroborated by 2+ sources
GATA1(7)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 125 →
Anemia, x-linked Dyserythropoietic anemia with abnormal platelets and neutropenia
1 gene
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1 of 1 corroborated by 2+ sources
GATA1(6)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 125 →
Anemia, x-linked GATA1-Related X-Linked Cytopenia
1 gene
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1 of 1 corroborated by 2+ sources
GATA1(4)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 125 →
Angiofollicular ganglionic hyperplasia Angiolymphoid hyperplasia
1 gene
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IL6(1)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 126 →
Angiofollicular ganglionic hyperplasia Castleman disease
1 gene
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1 of 1 corroborated by 2+ sources
IL6(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 126 →
Angiolymphoid hyperplasia Castleman disease
1 gene
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1 of 1 corroborated by 2+ sources
IL6(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 126 →
Ankyloblepharon-ectodermal defects-cleft lip/palate Limb-mammary syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TP63(6)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 27 →
Ankyloblepharon-ectodermal defects-cleft lip/palate Rudiger syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TP63(5)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 27 →
Ankyloblepharon-ectodermal defects-cleft lip/palate Sweat gland neoplasm
1 gene
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1 of 1 corroborated by 2+ sources
TP63(6)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 27 →
Ankylosis Beare-stevenson cutis gyrata syndrome
1 gene
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1 of 1 corroborated by 2+ sources
FGFR2(3)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 85 →
Ankylosis Cutis gyrata syndrome
1 gene
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1 of 1 corroborated by 2+ sources
FGFR2(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 85 →
Anomalous pulmonary venous Deafness with cataract, intellectual disability, and polyneuropathy
1 gene
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1 of 1 corroborated by 2+ sources
PSMC3(4)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
Anterior compartment syndrome Heme oxygenase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
HMOX1(7)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 371 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.