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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
PHARC syndrome Retinitis pigmentosa
1 gene
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1 of 1 corroborated by 2+ sources
ABHD12(2)
0.003 1.000 2.31e-2 2.49e-2 ✓ sig. Cluster 7 →
phytanoyl-CoA hydroxylase deficiency Retinitis pigmentosa
1 gene
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1 of 1 corroborated by 2+ sources
PHYH(3)
0.003 1.000 2.31e-2 2.49e-2 ✓ sig. —
PRPF31-related retinopathy Retinitis pigmentosa
1 gene
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1 of 1 corroborated by 2+ sources
PRPF31(7)
0.003 1.000 2.31e-2 2.49e-2 ✓ sig. Cluster 7 →
RAB28-related retinopathy Retinitis pigmentosa
1 gene
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1 of 1 corroborated by 2+ sources
RAB28(3)
0.003 1.000 2.31e-2 2.49e-2 ✓ sig. Cluster 7 →
RCBTB1-related retinopathy Retinitis pigmentosa
1 gene
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1 of 1 corroborated by 2+ sources
RCBTB1(3)
0.003 1.000 2.31e-2 2.49e-2 ✓ sig. —
RD3-related retinopathy Retinitis pigmentosa
1 gene
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1 of 1 corroborated by 2+ sources
RD3(2)
0.003 1.000 2.31e-2 2.49e-2 ✓ sig. —
Atherosclerosis Salt-sensitive hypertension
1 gene
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ADD1(1)
0.008 0.333 2.30e-2 2.49e-2 ✓ sig. —
Biliary tract cancer Uncombable hair syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TGM3(6)
0.008 0.333 2.28e-2 2.47e-2 ✓ sig. —
Biliary tract cancer Paraquat lung disease
1 gene
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1 of 1 corroborated by 2+ sources
SMAD7(3)
0.008 0.333 2.28e-2 2.47e-2 ✓ sig. —
Carnitine palmitoyltransferase deficiency Congenital neurologic anomalies
1 gene
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1 of 1 corroborated by 2+ sources
CPT2(8)
0.008 0.333 2.22e-2 2.41e-2 ✓ sig. —
Brain cancer Non-organic psychosis
1 gene
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1 of 1 corroborated by 2+ sources
0.014 0.200 2.22e-2 2.40e-2 ✓ sig. —
Oculopharyngodistal myopathy Urolithiasis
1 gene
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1 of 1 corroborated by 2+ sources
GIPC1(5)
0.014 0.200 2.22e-2 2.40e-2 ✓ sig. —
Glycine encephalopathy Non-organic psychosis
1 gene
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1 of 1 corroborated by 2+ sources
SLC6A9(7)
0.014 0.200 2.22e-2 2.40e-2 ✓ sig. —
Focal dystonia Venous thromboembolism
1 gene
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1 of 1 corroborated by 2+ sources
GNAL(3)
0.003 1.000 2.22e-2 2.40e-2 ✓ sig. —
neurodevelopmental disorder with cerebellar atrophy and motor dysfunction Venous thromboembolism
1 gene
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1 of 1 corroborated by 2+ sources
GEMIN5(2)
0.003 1.000 2.22e-2 2.40e-2 ✓ sig. —
syndromic multisystem autoimmune disease due to ITCH deficiency Venous thromboembolism
1 gene
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1 of 1 corroborated by 2+ sources
ITCH(2)
0.003 1.000 2.22e-2 2.40e-2 ✓ sig. —
Axonal neuropathy with neuromyotonia Venous thromboembolism
1 gene
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1 of 1 corroborated by 2+ sources
HINT1(4)
0.003 1.000 2.22e-2 2.40e-2 ✓ sig. —
Branchioskeletogenital syndrome Venous thromboembolism
1 gene
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1 of 1 corroborated by 2+ sources
CDH11(3)
0.003 1.000 2.22e-2 2.40e-2 ✓ sig. —
Developmental delay with overweight and facial dysmorphism Venous thromboembolism
1 gene
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1 of 1 corroborated by 2+ sources
SRRM2(3)
0.003 1.000 2.22e-2 2.40e-2 ✓ sig. —
Upshaw-schulman syndrome Venous thromboembolism
1 gene
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1 of 1 corroborated by 2+ sources
0.003 1.000 2.22e-2 2.40e-2 ✓ sig. —
Venous thromboembolism xeroderma pigmentosum group E
1 gene
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1 of 1 corroborated by 2+ sources
DDB2(2)
0.003 1.000 2.22e-2 2.40e-2 ✓ sig. —
Catifa syndrome Venous thromboembolism
1 gene
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1 of 1 corroborated by 2+ sources
RIC1(5)
0.003 1.000 2.22e-2 2.40e-2 ✓ sig. —
A4GALT-congenital disorder of glycosylation Venous thromboembolism
1 gene
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1 of 1 corroborated by 2+ sources
A4GALT(2)
0.003 1.000 2.22e-2 2.40e-2 ✓ sig. —
Intellectual developmental disorder growth metabolic Venous thromboembolism
1 gene
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1 of 1 corroborated by 2+ sources
DIP2B(3)
0.003 1.000 2.22e-2 2.40e-2 ✓ sig. Cluster 78 →
Curly hair ankyloblepharon nail dysplasia syndrome Venous thromboembolism
1 gene
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1 of 1 corroborated by 2+ sources
RIPK4(3)
0.003 1.000 2.22e-2 2.40e-2 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.