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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Benign flecked retina Retinitis pigmentosa
1 gene
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1 of 1 corroborated by 2+ sources
PLA2G5(5)
0.003 1.000 2.31e-2 2.49e-2 ✓ sig. —
Neovascular inflammatory vitreoretinopathy Retinitis pigmentosa
1 gene
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1 of 1 corroborated by 2+ sources
CAPN5(4)
0.003 1.000 2.31e-2 2.49e-2 ✓ sig. —
NYX-related retinopathy Retinitis pigmentosa
1 gene
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1 of 1 corroborated by 2+ sources
NYX(3)
0.003 1.000 2.31e-2 2.49e-2 ✓ sig. —
optic atrophy 10 with or without ataxia, intellectual disability, and seizures Retinitis pigmentosa
1 gene
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1 of 1 corroborated by 2+ sources
RTN4IP1(2)
0.003 1.000 2.31e-2 2.49e-2 ✓ sig. —
optic atrophy 3 Retinitis pigmentosa
1 gene
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1 of 1 corroborated by 2+ sources
OPA3(2)
0.003 1.000 2.31e-2 2.49e-2 ✓ sig. —
optic atrophy 9 Retinitis pigmentosa
1 gene
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1 of 1 corroborated by 2+ sources
ACO2(2)
0.003 1.000 2.31e-2 2.49e-2 ✓ sig. —
ornithine aminotransferase deficiency Retinitis pigmentosa
1 gene
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1 of 1 corroborated by 2+ sources
OAT(2)
0.003 1.000 2.31e-2 2.49e-2 ✓ sig. Cluster 7 →
Familial danish dementia Retinitis pigmentosa
1 gene
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1 of 1 corroborated by 2+ sources
ITM2B(2)
0.003 1.000 2.31e-2 2.49e-2 ✓ sig. —
GNAT2-related retinopathy Retinitis pigmentosa
1 gene
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1 of 1 corroborated by 2+ sources
GNAT2(2)
0.003 1.000 2.31e-2 2.49e-2 ✓ sig. —
GNPTG-mucolipidosis Retinitis pigmentosa
1 gene
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1 of 1 corroborated by 2+ sources
GNPTG(2)
0.003 1.000 2.31e-2 2.49e-2 ✓ sig. —
GPR179-related retinopathy Retinitis pigmentosa
1 gene
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1 of 1 corroborated by 2+ sources
GPR179(3)
0.003 1.000 2.31e-2 2.49e-2 ✓ sig. —
Developmental delay and seizures Retinitis pigmentosa
1 gene
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1 of 1 corroborated by 2+ sources
DHDDS(6)
0.003 1.000 2.31e-2 2.49e-2 ✓ sig. —
DHDDS-CDG Retinitis pigmentosa
1 gene
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1 of 1 corroborated by 2+ sources
DHDDS(7)
0.003 1.000 2.31e-2 2.49e-2 ✓ sig. —
Retinitis pigmentosa Tritanopia
1 gene
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1 of 1 corroborated by 2+ sources
OPN1SW(3)
0.003 1.000 2.31e-2 2.49e-2 ✓ sig. —
Retinitis pigmentosa TUBB4B-related ciliopathy
1 gene
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1 of 1 corroborated by 2+ sources
TUBB4B(2)
0.003 1.000 2.31e-2 2.49e-2 ✓ sig. Cluster 7 →
Retinitis pigmentosa Usher syndrome type 3
1 gene
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1 of 1 corroborated by 2+ sources
CLRN1(7)
0.003 1.000 2.31e-2 2.49e-2 ✓ sig. —
IDH3B-related retinopathy Retinitis pigmentosa
1 gene
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1 of 1 corroborated by 2+ sources
IDH3B(7)
0.003 1.000 2.31e-2 2.49e-2 ✓ sig. Cluster 7 →
Abri amyloidosis Retinitis pigmentosa
1 gene
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1 of 1 corroborated by 2+ sources
ITM2B(2)
0.003 1.000 2.31e-2 2.49e-2 ✓ sig. —
Acyl-coa binding domain containing protein 5 deficiency Retinitis pigmentosa
1 gene
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1 of 1 corroborated by 2+ sources
ACBD5(3)
0.003 1.000 2.31e-2 2.49e-2 ✓ sig. Cluster 7 →
ADAM9-related retinopathy Retinitis pigmentosa
1 gene
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1 of 1 corroborated by 2+ sources
ADAM9(3)
0.003 1.000 2.31e-2 2.49e-2 ✓ sig. —
Alzahrani-kuwahara syndrome Retinitis pigmentosa
1 gene
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1 of 1 corroborated by 2+ sources
SMG8(3)
0.003 1.000 2.31e-2 2.49e-2 ✓ sig. Cluster 7 →
Amaurosis hypertrichosis Retinitis pigmentosa
1 gene
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1 of 1 corroborated by 2+ sources
CNNM4(2)
0.003 1.000 2.31e-2 2.49e-2 ✓ sig. —
LZTFL1-related ciliopathy Retinitis pigmentosa
1 gene
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1 of 1 corroborated by 2+ sources
LZTFL1(2)
0.003 1.000 2.31e-2 2.49e-2 ✓ sig. —
Mak-related retinopathy Retinitis pigmentosa
1 gene
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1 of 1 corroborated by 2+ sources
MAK(7)
0.003 1.000 2.31e-2 2.49e-2 ✓ sig. —
microcephaly and chorioretinopathy 1 Retinitis pigmentosa
1 gene
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1 of 1 corroborated by 2+ sources
TUBGCP6(2)
0.003 1.000 2.31e-2 2.49e-2 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.