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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Cystic kidney disease with ventriculomegaly focal segmental glomerulosclerosis 9
1 gene
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1 of 1 corroborated by 2+ sources
CRB2(3)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
Czech dysplasia Dysspondyloenchondromatosis
1 gene
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1 of 1 corroborated by 2+ sources
COL2A1(5)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 11 →
Czech dysplasia kniest dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
COL2A1(4)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 11 →
Czech dysplasia spondyloperipheral dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
COL2A1(4)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 11 →
D-lactic aciduria D-lactic aciduria with gout
1 gene
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1 of 1 corroborated by 2+ sources
LDHD(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
Dacryocystitis Sclerosis
1 gene
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1 of 1 corroborated by 2+ sources
IL1RN(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 216 →
De barsy syndrome P5CS deficiency
1 gene
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1 of 1 corroborated by 2+ sources
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
De la chapelle dysplasia Diastrophic dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
SLC26A2(5)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 183 →
De la chapelle dysplasia Diastrophic dysplasia, broad bone-platyspondylic variant
1 gene
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SLC26A2(1)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 183 →
De la chapelle dysplasia Ear disease
1 gene
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1 of 1 corroborated by 2+ sources
SLC26A2(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 183 →
De la chapelle dysplasia SLC26A2-related skeletal dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
SLC26A2(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 183 →
Deaf blind hypopigmentation syndrome Yemenite deaf-blind hypopigmentation syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SOX10(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
Deaf blind hypopigmentation syndrome Waardenburg syndrome type 4C
1 gene
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1 of 1 corroborated by 2+ sources
SOX10(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
Deafness and myopia high myopia-sensorineural deafness syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SLITRK6(4)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
Deafness with congenital and adult-onset progressive leukodystrophy Early onset progressive leukoencephalopathy-central nervous system calcification-hearing loss-visual impairment syndrome
1 gene
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1 of 1 corroborated by 2+ sources
KARS1(3)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
Deafness with congenital and adult-onset progressive leukodystrophy Early-onset progressive leukoencephalopathy-central nervous system calcification-deafness-visual impairment syndrome
1 gene
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1 of 1 corroborated by 2+ sources
KARS1(4)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
Deafness with congenital heart defects and posterior embryotoxon Hepatic ductular hypoplasia
1 gene
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1 of 1 corroborated by 2+ sources
JAG1(3)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 356 →
Deafness with labyrinthine aplasia, microtia, and microdontia Otodental dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
FGF3(7)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
Deafness-lymphedema-leukemia syndrome Gata2 deficiency
1 gene
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1 of 1 corroborated by 2+ sources
GATA2(5)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 136 →
Deafness, onychodystrophy, osteodystrophy, impaired intellectual development, and seizures syndrome Focal epilepsy-intellectual disability-cerebro-cerebellar malformation
1 gene
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1 of 1 corroborated by 2+ sources
TBC1D24(3)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 90 →
Delta zero thalassemia Delta-thalassemia
1 gene
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HBD(1)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
Delta zero thalassemia Hemoglobin lepore beta thalassemia
1 gene
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1 of 1 corroborated by 2+ sources
HBD(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
Delta-sarcoglycan-related limb-girdle muscular dystrophy r6 dilated cardiomyopathy 1L
1 gene
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1 of 1 corroborated by 2+ sources
SGCD(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
Delta-thalassemia Hemoglobin lepore beta thalassemia
1 gene
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1 of 1 corroborated by 2+ sources
HBD(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
Demyelinating leukodystrophy microcephaly 26, primary, autosomal dominant
1 gene
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1 of 1 corroborated by 2+ sources
LMNB1(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.