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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Catatonia Migraine
1 gene
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1 of 1 corroborated by 2+ sources
CHRM4(3)
0.002 1.000 2.62e-2 2.80e-2 ✓ sig. —
Migraine severe combined immunodeficiency due to DCLRE1C deficiency
1 gene
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1 of 1 corroborated by 2+ sources
DCLRE1C(2)
0.002 1.000 2.62e-2 2.80e-2 ✓ sig. —
Migraine T-cell immunodeficiency
1 gene
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1 of 1 corroborated by 2+ sources
FOXI3(2)
0.002 1.000 2.62e-2 2.80e-2 ✓ sig. —
Deeah syndrome Migraine
1 gene
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1 of 1 corroborated by 2+ sources
MADD(4)
0.002 1.000 2.62e-2 2.80e-2 ✓ sig. —
Intellectual developmental disorder dysmorphic ptosis Post-traumatic stress disorder
1 gene
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1 of 1 corroborated by 2+ sources
RPL10L(2)
0.005 0.500 2.62e-2 2.80e-2 ✓ sig. —
Fructokinase deficiency Post-traumatic stress disorder
1 gene
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1 of 1 corroborated by 2+ sources
CGREF1(2)
0.005 0.500 2.62e-2 2.80e-2 ✓ sig. —
Candle syndrome Iga nephropathy
1 gene
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1 of 1 corroborated by 2+ sources
PSMB8(2)
0.005 0.500 2.62e-2 2.80e-2 ✓ sig. —
Cataract Congenital lamellar cataract
1 gene
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1 of 1 corroborated by 2+ sources
HSF4(5)
0.005 0.500 2.59e-2 2.77e-2 ✓ sig. Cluster 43 →
Intellectual developmental disorder dysmorphic facial Irritable bowel syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SETD5(2)
0.007 0.333 2.59e-2 2.77e-2 ✓ sig. —
Advanced sleep phase syndrome Irritable bowel syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PER2(4)
0.007 0.333 2.59e-2 2.77e-2 ✓ sig. —
Cytosolic acetoacetyl-coa thiolase deficiency Myocardial ischemia
1 gene
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1 of 1 corroborated by 2+ sources
ACAT2(2)
0.003 1.000 2.54e-2 2.71e-2 ✓ sig. —
Hmg-coa synthase deficiency Myocardial ischemia
1 gene
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1 of 1 corroborated by 2+ sources
HMGCS2(4)
0.003 1.000 2.54e-2 2.71e-2 ✓ sig. —
hypotaurinemic retinal degeneration and cardiomyopathy Myocardial ischemia
1 gene
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1 of 1 corroborated by 2+ sources
SLC6A6(3)
0.003 1.000 2.54e-2 2.71e-2 ✓ sig. —
Myocardial ischemia neurodevelopmental disorder with microcephaly, ataxia, and seizures
1 gene
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1 of 1 corroborated by 2+ sources
SARS1(2)
0.003 1.000 2.54e-2 2.71e-2 ✓ sig. —
inborn glycerol kinase deficiency Myocardial ischemia
1 gene
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1 of 1 corroborated by 2+ sources
GK(3)
0.003 1.000 2.54e-2 2.71e-2 ✓ sig. —
Myocardial ischemia PGM1-congenital disorder of glycosylation
1 gene
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1 of 1 corroborated by 2+ sources
PGM1(3)
0.003 1.000 2.54e-2 2.71e-2 ✓ sig. —
Myocardial ischemia polyglucosan body myopathy type 2
1 gene
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1 of 1 corroborated by 2+ sources
GYG1(3)
0.003 1.000 2.54e-2 2.71e-2 ✓ sig. —
Myocardial ischemia RAB23-related Carpenter syndrome
1 gene
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1 of 1 corroborated by 2+ sources
RAB23(2)
0.003 1.000 2.54e-2 2.71e-2 ✓ sig. —
long chain 3-hydroxyacyl-coa dehydrogenase deficiency Myocardial ischemia
1 gene
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1 of 1 corroborated by 2+ sources
HADHA(3)
0.003 1.000 2.54e-2 2.71e-2 ✓ sig. —
methylmalonate semialdehyde dehydrogenase deficiency Myocardial ischemia
1 gene
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1 of 1 corroborated by 2+ sources
ALDH6A1(3)
0.003 1.000 2.54e-2 2.71e-2 ✓ sig. —
Glycerol kinase deficiency Myocardial ischemia
1 gene
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1 of 1 corroborated by 2+ sources
GK(2)
0.003 1.000 2.54e-2 2.71e-2 ✓ sig. —
Developmental delay due to metabolic enzyme deficiency Myocardial ischemia
1 gene
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1 of 1 corroborated by 2+ sources
ALDH6A1(3)
0.003 1.000 2.54e-2 2.71e-2 ✓ sig. —
Hearing loss hearing loss, autosomal recessive 115
1 gene
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1 of 1 corroborated by 2+ sources
SPNS2(4)
0.003 1.000 2.51e-2 2.69e-2 ✓ sig. Cluster 26 →
Hearing loss hearing loss, autosomal recessive 116
1 gene
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1 of 1 corroborated by 2+ sources
CLDN9(4)
0.003 1.000 2.51e-2 2.69e-2 ✓ sig. —
Hearing loss hearing loss, autosomal recessive 120
1 gene
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1 of 1 corroborated by 2+ sources
MINAR2(3)
0.003 1.000 2.51e-2 2.69e-2 ✓ sig. Cluster 26 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.