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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Aminoacylase deficiency Becker nevus syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ACTB(4)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 186 →
Aminoacylase deficiency Congenital smooth muscle hamartoma
1 gene
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1 of 1 corroborated by 2+ sources
ACTB(3)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 186 →
Aminoacylase deficiency Developmental malformations-deafness-dystonia syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ACTB(4)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 186 →
Aminoacylase deficiency Dystonia-deafness syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ACTB(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 186 →
ACTB-associated syndromic thrombocytopenia Aminoacylase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
ACTB(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 186 →
amyloidosis, hereditary systemic 6 Visceral amyloidosis
1 gene
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1 of 1 corroborated by 2+ sources
B2M(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 228 →
amyotrophic lateral sclerosis type 1 Ureteral calculi
1 gene
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1 of 1 corroborated by 2+ sources
SOD1(3)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 285 →
amyotrophic lateral sclerosis type 11 Micropenis
1 gene
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1 of 1 corroborated by 2+ sources
FIG4(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 103 →
Anaplastic oligoastrocytoma Central nervous system disease
1 gene
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1 of 1 corroborated by 2+ sources
IDH2(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Anaplastic oligoastrocytoma Combined d-2- and l-2-hydroxyglutaric aciduria
1 gene
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1 of 1 corroborated by 2+ sources
IDH2(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Angel-shaped phalangoepiphyseal dysplasia Multiple synostoses syndrome
1 gene
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1 of 1 corroborated by 2+ sources
GDF5(6)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Anhidrotic ectodermal dysplasia Craniofrontonasal dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
EDA(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 117 →
Ankyloblepharon-ectodermal defects-cleft lip/palate Cleft lip and cleft of alveolar process of maxilla
1 gene
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1 of 1 corroborated by 2+ sources
TP63(5)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 27 →
Anodontia Severe neonatal spondylometaphyseal dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
SBDS(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 159 →
Anodontia craniofacial dysplasia - osteopenia syndrome
1 gene
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1 of 1 corroborated by 2+ sources
IRX5(4)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 159 →
Anodontia Tooth and nail syndrome
1 gene
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1 of 1 corroborated by 2+ sources
MSX1(3)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 159 →
Anodontia Witkop syndrome
1 gene
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1 of 1 corroborated by 2+ sources
MSX1(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 159 →
Anodontia tooth agenesis, selective, 1
1 gene
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1 of 1 corroborated by 2+ sources
MSX1(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 159 →
Anonychia Campomelic dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
SOX9(6)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Anonychia Camptomelic dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
SOX9(3)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Anonychia Cooks syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SOX9(4)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Anonychia isolated Pierre-Robin syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SOX9(3)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Anonychia Dominant dystrophic epidermolysis bullosa with absence of skin
1 gene
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1 of 1 corroborated by 2+ sources
COL7A1(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 160 →
anterior segment dysgenesis 4 Rieger syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PITX2(3)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 253 →
Anti-glomerular basement membrane disease Autoimmune pulmonary alveolar proteinosis
1 gene
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1 of 1 corroborated by 2+ sources
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 1 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.