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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
fanconi anemia complementation group e Ovarian cancer
1 gene
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1 of 1 corroborated by 2+ sources
FANCE(2)
0.002 1.000 3.03e-2 3.21e-2 ✓ sig. —
CTR9-related neurodevelopmental disorder Ovarian cancer
1 gene
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1 of 1 corroborated by 2+ sources
CTR9(2)
0.002 1.000 3.03e-2 3.21e-2 ✓ sig. —
Deafness, encephaloneuropathy, obesity, valvulopathy syndrome Ovarian cancer
1 gene
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1 of 1 corroborated by 2+ sources
PDSS1(4)
0.002 1.000 3.03e-2 3.21e-2 ✓ sig. —
Ovarian cancer Riboflavin deficiency
1 gene
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1 of 1 corroborated by 2+ sources
SLC52A1(4)
0.002 1.000 3.03e-2 3.21e-2 ✓ sig. —
Obsessive-compulsive disorder Trichotillomania
1 gene
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1 of 1 corroborated by 2+ sources
HOXB8(2)
0.004 0.500 3.02e-2 3.21e-2 ✓ sig. —
Butyryl-coa dehydrogenase deficiency Obsessive-compulsive disorder
1 gene
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1 of 1 corroborated by 2+ sources
ACADS(3)
0.004 0.500 3.02e-2 3.21e-2 ✓ sig. —
Congenital stromal corneal dystrophy Epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
SPARCL1(3)
0.004 0.500 3.00e-2 3.19e-2 ✓ sig. —
Epilepsy Lewis lung carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
TXNRD1(2)
0.004 0.500 3.00e-2 3.19e-2 ✓ sig. —
Dental caries Smith-mccort dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
DYM(6)
0.004 0.500 2.98e-2 3.17e-2 ✓ sig. —
Candle syndrome Dental caries
1 gene
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1 of 1 corroborated by 2+ sources
PSMB8(2)
0.004 0.500 2.98e-2 3.17e-2 ✓ sig. —
Dental caries Intestinal vascular insufficiency
1 gene
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NEDD9(1)
0.004 0.500 2.98e-2 3.17e-2 ✓ sig. —
Ileocolitis Ocular sarcoidosis
1 gene
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MAGI1(1)
0.015 0.125 2.97e-2 3.16e-2 ✓ sig. —
Appendiceal disorder Premature ovarian failure
1 gene
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1 of 1 corroborated by 2+ sources
MND1(2)
0.008 0.250 2.93e-2 3.11e-2 ✓ sig. —
Central hypoventilation syndrome Neuroblastoma
1 gene
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1 of 1 corroborated by 2+ sources
PHOX2B(7)
0.006 0.333 2.91e-2 3.10e-2 ✓ sig. —
Amelocerebrohypohidrotic syndrome Developmental and epileptic encephalopathy
1 gene
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1 of 1 corroborated by 2+ sources
SLC13A5(7)
0.005 0.500 2.84e-2 3.02e-2 ✓ sig. —
Gm2 gangliosidosis Psychiatric disorders
1 gene
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1 of 1 corroborated by 2+ sources
GM2A(3)
0.005 0.500 2.82e-2 3.00e-2 ✓ sig. —
Erythrocyte amp deaminase deficiency Melanoma
1 gene
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1 of 1 corroborated by 2+ sources
AMPD3(5)
0.002 1.000 2.83e-2 3.00e-2 ✓ sig. —
free sialic acid storage disease Melanoma
1 gene
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1 of 1 corroborated by 2+ sources
SLC17A5(2)
0.002 1.000 2.83e-2 3.00e-2 ✓ sig. —
ciliary dyskinesia, primary, 45 Neurotic disorder
1 gene
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1 of 1 corroborated by 2+ sources
TTC12(2)
0.002 1.000 2.83e-2 3.00e-2 ✓ sig. —
lesch-nyhan syndrome Neurotic disorder
1 gene
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1 of 1 corroborated by 2+ sources
HPRT1(2)
0.002 1.000 2.83e-2 3.00e-2 ✓ sig. —
meier-gorlin syndrome 2 Neurotic disorder
1 gene
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1 of 1 corroborated by 2+ sources
ORC4(2)
0.002 1.000 2.83e-2 3.00e-2 ✓ sig. —
Congenital cerebellar hypoplasia Neurotic disorder
1 gene
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1 of 1 corroborated by 2+ sources
OXR1(3)
0.002 1.000 2.83e-2 3.00e-2 ✓ sig. —
Neurotic disorder Neutrophilic leukemia
1 gene
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1 of 1 corroborated by 2+ sources
CSF3R(2)
0.002 1.000 2.83e-2 3.00e-2 ✓ sig. —
Neurotic disorder Oculocerebrofacial syndrome
1 gene
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1 of 1 corroborated by 2+ sources
UBE3B(4)
0.002 1.000 2.83e-2 3.00e-2 ✓ sig. —
Hoxha-aliu syndrome Neurotic disorder
1 gene
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1 of 1 corroborated by 2+ sources
ERI1(4)
0.002 1.000 2.83e-2 3.00e-2 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.