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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
46,xx sex reversal X-linked congenital generalized hypertrichosis
1 gene
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1 of 1 corroborated by 2+ sources
SOX3(4)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Aortic rupture X-linked distal spinal muscular atrophy
1 gene
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1 of 1 corroborated by 2+ sources
ATP7A(6)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Dysfibrinogenemia X-linked hyper-igm syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CD40LG(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Hemiplegic migraine X-linked optic atrophy
1 gene
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WDR45(1)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 391 →
Diaphragmatic malformations X-linked osteoporosis
1 gene
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1 of 1 corroborated by 2+ sources
PLS3(4)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Retinoschisis X-linked retinoschisis
1 gene
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1 of 1 corroborated by 2+ sources
RS1(7)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
xeroderma pigmentosum group B Xeroderma pigmentosum-cockayne syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ERCC3(4)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 86 →
xeroderma pigmentosum group D Xeroderma pigmentosum-cockayne syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ERCC2(3)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 86 →
xeroderma pigmentosum group F Xeroderma pigmentosum-cockayne syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ERCC4(3)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
xeroderma pigmentosum group G Xeroderma pigmentosum-cockayne syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ERCC5(4)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 86 →
myopathy caused by variation in FKRP Paresthesia
1 gene
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1 of 1 corroborated by 2+ sources
FKRP(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Myotonia Sotos syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SCN4A(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 163 →
Interrupted aortic arch Myotonic dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
NKX2-5(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 161 →
Myotonic dystrophy NKX2.5-related congenital, conduction and myopathic heart disease
1 gene
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1 of 1 corroborated by 2+ sources
NKX2-5(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 161 →
Nasodigitoacoustic syndrome Simpson-golabi-behmel syndrome
1 gene
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1 of 1 corroborated by 2+ sources
GPC4(5)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 200 →
Congenital nemaline myopathy nemaline myopathy 2
1 gene
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1 of 1 corroborated by 2+ sources
NEB(4)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 51 →
Congenital nemaline myopathy nemaline myopathy 8
1 gene
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1 of 1 corroborated by 2+ sources
KLHL40(4)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 51 →
Congenital nemaline myopathy nemaline myopathy 9
1 gene
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1 of 1 corroborated by 2+ sources
KLHL41(4)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 51 →
Nephrotic syndrome, focal segmental type Papillorenal syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PAX2(3)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Neural tube defects, susceptibility to Yellow nail syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CELSR1(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 94 →
Neurofibrosarcoma noonan syndrome with multiple lentigines
1 gene
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1 of 1 corroborated by 2+ sources
NRAS(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
neuronopathy, distal hereditary motor, autosomal dominant Vacuolar myopathy
1 gene
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1 of 1 corroborated by 2+ sources
HSPB8(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Neuropathy, congenital hypomyelinating RHO-related retinopathy
1 gene
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1 of 1 corroborated by 2+ sources
RHO(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 190 →
Hairy cell leukemia noonan syndrome with multiple lentigines
1 gene
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1 of 1 corroborated by 2+ sources
BRAF(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
46,xx sex reversal NR2F2 related multiple congenital anomalies/dysmorphic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
NR2F2(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 38 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.