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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
neurodevelopmental disorder with language impairment and behavioral abnormalities Substance abuse
1 gene
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1 of 1 corroborated by 2+ sources
GRIA2(2)
0.002 1.000 3.35e-2 3.55e-2 ✓ sig. —
neurodevelopmental disorder with or without seizures and gait abnormalities Substance abuse
1 gene
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1 of 1 corroborated by 2+ sources
GRIA4(2)
0.002 1.000 3.35e-2 3.55e-2 ✓ sig. —
neurodevelopmental disorder with spasticity, cataracts, and cerebellar hypoplasia Substance abuse
1 gene
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1 of 1 corroborated by 2+ sources
MED27(2)
0.002 1.000 3.35e-2 3.55e-2 ✓ sig. —
cardiomyopathy, dilated, 2j Substance abuse
1 gene
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1 of 1 corroborated by 2+ sources
FLII(2)
0.002 1.000 3.35e-2 3.55e-2 ✓ sig. —
Intellectual developmental disorder dysmorphic facial hearing joint Substance abuse
1 gene
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1 of 1 corroborated by 2+ sources
TET3(2)
0.002 1.000 3.35e-2 3.55e-2 ✓ sig. —
HELIOS deficiency Substance abuse
1 gene
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1 of 1 corroborated by 2+ sources
IKZF2(2)
0.002 1.000 3.35e-2 3.55e-2 ✓ sig. —
hermansky-pudlak syndrome 5 Substance abuse
1 gene
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1 of 1 corroborated by 2+ sources
HPS5(2)
0.002 1.000 3.35e-2 3.55e-2 ✓ sig. —
Beck-fahrner syndrome Substance abuse
1 gene
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1 of 1 corroborated by 2+ sources
TET3(6)
0.002 1.000 3.35e-2 3.55e-2 ✓ sig. —
Bilateral cleft lip Substance abuse
1 gene
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1 of 1 corroborated by 2+ sources
PLEKHA5(2)
0.002 1.000 3.35e-2 3.55e-2 ✓ sig. —
Substance abuse xeroderma pigmentosum group E
1 gene
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1 of 1 corroborated by 2+ sources
DDB2(2)
0.002 1.000 3.35e-2 3.55e-2 ✓ sig. —
Tourette syndrome Trichotillomania
1 gene
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1 of 1 corroborated by 2+ sources
SLITRK1(5)
0.004 0.500 3.32e-2 3.52e-2 ✓ sig. —
Lewis lung carcinoma Lung neoplasms
1 gene
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LECT2(1)
0.004 0.500 3.27e-2 3.47e-2 ✓ sig. —
Long qt syndrome Oculopharyngodistal myopathy
1 gene
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1 of 1 corroborated by 2+ sources
LRP12(6)
0.009 0.200 3.27e-2 3.47e-2 ✓ sig. —
Anorexia nervosa Hyperprolinemia
1 gene
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1 of 1 corroborated by 2+ sources
ALDH4A1(7)
0.004 0.500 3.23e-2 3.43e-2 ✓ sig. —
Anorexia nervosa Butyryl-coa dehydrogenase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
ACADS(3)
0.004 0.500 3.23e-2 3.43e-2 ✓ sig. —
Kidney failure Sandhoff disease
1 gene
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1 of 1 corroborated by 2+ sources
HEXB(7)
0.004 0.500 3.23e-2 3.43e-2 ✓ sig. —
Mountain sickness Pancreatic cancer
1 gene
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TACC1(1)
0.004 0.500 3.22e-2 3.42e-2 ✓ sig. —
Pancreatic cancer Trichotillomania
1 gene
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1 of 1 corroborated by 2+ sources
SLITRK1(5)
0.004 0.500 3.22e-2 3.42e-2 ✓ sig. —
Nephropathic cystinosis Nephrotic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CTNS(5)
0.006 0.333 3.20e-2 3.39e-2 ✓ sig. —
Cardiomyopathy Congenital chronic diarrhea with protein-losing enteropathy
1 gene
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1 of 1 corroborated by 2+ sources
DGAT1(2)
0.004 0.500 3.14e-2 3.34e-2 ✓ sig. —
Mitochondrial disease Sandhoff disease
1 gene
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GFM2(1)
0.004 0.500 3.12e-2 3.31e-2 ✓ sig. Cluster 50 →
3-methylcrotonyl-coa carboxylase deficiency Mitochondrial disease
1 gene
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1 of 1 corroborated by 2+ sources
MCCC2(4)
0.004 0.500 3.12e-2 3.31e-2 ✓ sig. —
Early-onset progressive encephalopathy-hearing loss-pons hypoplasia-brain atrophy syndrome Mitochondrial disease
1 gene
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1 of 1 corroborated by 2+ sources
LIPT2(3)
0.004 0.500 3.12e-2 3.31e-2 ✓ sig. —
Diabetes mellitus type 1 Diaphanospondylodysostosis
1 gene
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1 of 1 corroborated by 2+ sources
BMPER(6)
0.002 1.000 3.10e-2 3.29e-2 ✓ sig. —
Diabetes mellitus type 1 NIK deficiency
1 gene
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1 of 1 corroborated by 2+ sources
MAP3K14(2)
0.002 1.000 3.10e-2 3.29e-2 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.