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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Alpha thalassemia x-linked intellectual disability Penile disease
1 gene
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1 of 1 corroborated by 2+ sources
ATRX(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 122 →
Atr-x syndrome Penile disease
1 gene
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1 of 1 corroborated by 2+ sources
ATRX(3)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 122 →
Penile disease X-linked alpha-thalassemia-intellectual disability syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ATRX(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 122 →
Eye pain Penile disease
1 gene
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POMC(1)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Peptic esophagitis Rickets
1 gene
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1 of 1 corroborated by 2+ sources
VDR(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 396 →
Embryonal nuclear cataract Periodic paralysis with transient compartment-like syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CACNA1S(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Intestinal polyps platelet-type bleeding disorder 12
1 gene
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1 of 1 corroborated by 2+ sources
PTGS1(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Cardiac valvular dysplasia PLD1-related congenital heart disease
1 gene
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1 of 1 corroborated by 2+ sources
PLD1(5)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 62 →
Popliteal pterygium syndrome Van der woude syndrome
1 gene
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1 of 1 corroborated by 2+ sources
IRF6(7)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Congenital insensitivity to pain Primary erythromelalgia
1 gene
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1 of 1 corroborated by 2+ sources
SCN9A(3)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 164 →
Prolidase deficiency Skin ulcer
1 gene
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1 of 1 corroborated by 2+ sources
PEPD(3)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 330 →
Pulmonary surfactant metabolism dysfunction Respiratory distress with surfactant metabolism deficiency
1 gene
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1 of 1 corroborated by 2+ sources
SFTPC(7)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Pulmonary surfactant metabolism dysfunction SFTPC-related interstitial lung disease
1 gene
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1 of 1 corroborated by 2+ sources
SFTPC(6)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
RDH5-related retinopathy Retinitis punctata albescens
1 gene
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1 of 1 corroborated by 2+ sources
RDH5(3)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 45 →
Congenital retrognathism regressive spondylometaphyseal dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
LBR(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 280 →
Congenital muscular hypertrophy-cerebral syndrome De lange syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SMC1A(3)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 297 →
Congenital musculoskeletal anomalies Lymphedema-distichiasis syndrome
1 gene
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1 of 1 corroborated by 2+ sources
FOXC2(3)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Congenital musculoskeletal anomalies Lymphedema-distichiasis syndrome with renal disease and diabetes mellitus
1 gene
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FOXC2(1)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Congenital retinal aneurysm Cyclin-dependent kinase-like 5 deficiency
1 gene
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RS1(1)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Congenital retinal anomaly Cyclin-dependent kinase-like 5 deficiency
1 gene
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RS1(1)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Congenital retrognathism kbg syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ANKRD11(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Congenital retrognathism Diazoxide-resistant focal hyperinsulinism due to sulfonylurea receptor 1 deficiency
1 gene
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1 of 1 corroborated by 2+ sources
ABCC8(3)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Congenital retrognathism hyperinsulinemic hypoglycemia, familial, 1
1 gene
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1 of 1 corroborated by 2+ sources
ABCC8(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Congenital retrognathism Reynolds syndrome
1 gene
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1 of 1 corroborated by 2+ sources
LBR(5)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 280 →
Congenital sclerocornea Sutural cataract
1 gene
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1 of 1 corroborated by 2+ sources
GJA8(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.