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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Congenital kidney anomaly Pancreatic cyst
1 gene
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PKD1(1)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. Cluster 70 →
Congenital leukocyte adherence deficiency Leukocyte disorders
1 gene
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1 of 1 corroborated by 2+ sources
ITGB2(2)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. Cluster 155 →
Familial mediterranean fever Orthostatic hypotension
1 gene
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1 of 1 corroborated by 2+ sources
ABCB1(2)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. Cluster 57 →
Follicular cyst Hyperalphalipoproteinemia
1 gene
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1 of 1 corroborated by 2+ sources
SCARB1(3)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. —
Crst syndrome Geleophysic dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
FBN1(5)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. Cluster 52 →
Glanzmann thrombasthenia Hyper-immunoglobulin e syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ITGB3(8)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. —
Corneal opacity Gm1 gangliosidosis
1 gene
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1 of 1 corroborated by 2+ sources
GLB1(7)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. —
Blepharophimosis syndrome Granulosa cell tumor of ovary
1 gene
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1 of 1 corroborated by 2+ sources
FOXL2(3)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. —
Bilateral perisylvian polymicrogyria Combined immunodeficiency-multiple intestinal atresia
1 gene
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PI4KA(1)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. Cluster 267 →
Biliary tract neoplasms Congenital aural atresia
1 gene
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1 of 1 corroborated by 2+ sources
FGFR2(2)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. Cluster 85 →
Biliary tract neoplasms Crouzon syndrome
1 gene
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1 of 1 corroborated by 2+ sources
FGFR2(6)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. Cluster 85 →
Bladder neck obstruction Ovarian diseases
1 gene
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1 of 1 corroborated by 2+ sources
CYP19A1(2)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. Cluster 375 →
Blast crisis Myelogenous leukemia
1 gene
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1 of 1 corroborated by 2+ sources
BCR(2)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. Cluster 131 →
Blast crisis Chromosome 22q11.2 microdeletion syndrome
1 gene
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1 of 1 corroborated by 2+ sources
BCR(3)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. Cluster 131 →
Bohring syndrome Cold-induced sweating syndrome
1 gene
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1 of 1 corroborated by 2+ sources
KLHL7(3)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. Cluster 331 →
Bohring syndrome Crisponi syndrome
1 gene
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1 of 1 corroborated by 2+ sources
KLHL7(2)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. Cluster 331 →
Bor syndrome Branchiooculofacial syndrome
1 gene
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1 of 1 corroborated by 2+ sources
EYA1(2)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. Cluster 145 →
Bowed long bones Bruck syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PLOD2(6)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. —
Brachydactyly-elbow wrist dysplasia syndrome Pfaundler-hurler syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PITX1(2)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. Cluster 296 →
Brown-vialetto-van laere syndrome Bulbar palsy
1 gene
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1 of 1 corroborated by 2+ sources
SLC52A3(6)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. —
Bruck syndrome Buruli ulcer
1 gene
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1 of 1 corroborated by 2+ sources
PLOD2(6)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. —
Calcium pyrophosphate deposition Chondrocalcinosis
1 gene
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1 of 1 corroborated by 2+ sources
ANKH(6)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. Cluster 208 →
Calcium pyrophosphate deposition Craniometaphyseal dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
ANKH(6)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. Cluster 208 →
Canavan disease Olmsted syndrome
1 gene
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SPATA22(1)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. Cluster 242 →
Capillary leak syndrome Coronary artery vasospasm
1 gene
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PON1(1)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. Cluster 315 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.